Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e18f
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.013
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 1.2
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 27 1.5
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 27 1.5
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 27 1.5
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 3.6
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 4.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.3
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.013
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +1
Query: 187 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS---QLTSKVIVAVGIDLPE 357
G+ A ++ IK I+ +GF G Y+GLSA +LG+ ++ L K AV I
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLR 255
Query: 358 INDPPNIVTDDEPKVEDY-IKLGRRDMIMQTVAVVIAHPFHVVSVRMMAS-FIGKEEHYS 531
+ I KV D+ KLG I + +A IA+P VV R+ S I Y+
Sbjct: 256 RKE-LGIQETIYDKVLDWGGKLGGAG-IAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYT 313
Query: 532 SLLGAIVSIYKDDGILG 582
L+ ++ + GI+G
Sbjct: 314 GLIQCFKLVWMEQGIVG 330
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 187 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 300
G+ M+L ++ I ++G G YRG+ MLG +
Sbjct: 45 GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 412 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 519
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 460 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGF 585
+++PF V +M I K + + L + + YK+ G+ GF
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGF 294
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 412 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 519
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 448 VAVVIAHPFHVVSVRMMASFI-GKEEHYSSLLGAIVSIYKDDGILGF 585
+ + P V+ R + I G +Y ++ AI IYK +GI GF
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGF 285
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 490 RMMASF-IGKEEHYSSLLGAIVSIYKDDGILGF 585
RM F + + Y+SL +V I+ +G++GF
Sbjct: 43 RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGF 75
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 4.7
Identities = 32/132 (24%), Positives = 49/132 (37%)
Frame = +1
Query: 190 RPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDP 369
RP L Q + I +G G YRGL+A + A S + ++ L + P
Sbjct: 138 RPNPRLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSL-QSRLP 196
Query: 370 PNIVTDDEPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI 549
P D++ +G + + V P V RM + KE Y + +
Sbjct: 197 P----DEKLSTVTTFLVG---SVAGIITVYCTQPIDTVKSRMQSLSASKE--YKNSIHCA 247
Query: 550 VSIYKDDGILGF 585
I DG+L F
Sbjct: 248 YKILTQDGLLRF 259
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 460 IAHPFHVVSVRMMAS-FIGKEEHYSSLLGAIVSIYK 564
I P VS+ + A F G E+Y L G+I + YK
Sbjct: 2155 ITWPLSAVSILIFALLFKGLPEYYRQLSGSIPAFYK 2190
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 459 NDCYRLHDHVSAS*FDVIFNFGFIIGDDV 373
NDC R ++H + S F + F+ DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,210
Number of Sequences: 5004
Number of extensions: 55052
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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