Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e18f
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592... 33 0.17
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 33 0.23
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 32 0.39
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 31 0.52
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 31 0.69
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 30 1.6
09_04_0551 - 18488584-18490017 30 1.6
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 30 1.6
03_02_0646 + 10141967-10142476,10143721-10144254 29 2.1
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 28 4.8
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 28 4.8
01_07_0289 + 42540059-42541141 28 6.4
04_04_0058 - 22416949-22418196 27 8.5
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 27 8.5
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 27 8.5
>03_02_0148 -
5928703-5928931,5929099-5929171,5929288-5929408,
5929907-5929952,5930361-5930571,5930837-5930986,
5931122-5931179,5931285-5931400,5931986-5932091
Length = 369
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 211 NVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 378
N+FQ I+ + SDG G YRG+S + G +A VI + L N PN+
Sbjct: 78 NIFQMIRTVWVSDGLKGFYRGISPGVTGSLATGATYFGVIESTKTWLEHSN--PNL 131
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 448 VAVVIAHPFHVVSVRMMASFIGK----EEHYSSLLGAIVSIYKDDGI 576
+A+V+A+P +V VR+ A GK + HYS L A +I + +GI
Sbjct: 124 IAIVVANPTDLVKVRLQAD--GKATTVKRHYSGALNAYATIIRQEGI 168
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 378
FGC L + +IA S+ +++ V +P ++DPP +
Sbjct: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKL 124
>02_02_0469 +
10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 213 RFPVYKVHKGFGWFLRLLQGLISKNAWSYRRKSTHIEGNSS 335
+FP + + F + LL G + K +Y+RK H+E N S
Sbjct: 464 KFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKS 504
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 31.1 bits (67), Expect = 0.69
Identities = 31/124 (25%), Positives = 54/124 (43%)
Frame = +1
Query: 214 VFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDE 393
+ +++ I +G G YRGL A + G++ + + G D + +V D
Sbjct: 198 ICHFVQTIYNKNGIRGIYRGLPASLQGMVV-----HRGLYFGGFDTAK----DVMVPLDS 248
Query: 394 PKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDG 573
P + ++ + ++A +I++P V RMM + YSS L IYK +G
Sbjct: 249 PLWQRWVTA----QAVTSMAGLISYPLDTVRRRMMMQSGMDVQMYSSTLDCWRKIYKVEG 304
Query: 574 ILGF 585
I F
Sbjct: 305 IKSF 308
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 166 RRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS 309
RR G+P + N F K I +++GFF +RG+ A +L +A +
Sbjct: 254 RRMMLTSGQP-LKYKNAFHAAKQIVSTEGFFTLFRGVGANILSGMAGA 300
>09_04_0551 - 18488584-18490017
Length = 477
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 193 PAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGID-LPEINDP 369
P M+L +VF Y A + A +A + ++SK V LP I DP
Sbjct: 18 PMMVLADVFLDHGYAVAVALINPSVKDDDAAFTAAVARA-VSSKSSATVSFHMLPRIPDP 76
Query: 370 PNIVTDDEPKVEDYIKLGRR 429
P++ DD+ +Y L RR
Sbjct: 77 PSLAFDDDKFFTNYFDLVRR 96
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 106 CHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSAR 285
CHP++ K Q+ PR + + ++ +K I A +GF G Y+GL
Sbjct: 258 CHPLDVVKKRFQIEGLKRHPRYGARI---ESSTYKGMYHALKEIVAKEGFGGLYKGLFPS 314
Query: 286 MLGLIAASQLT 318
++ A +T
Sbjct: 315 LVKSAPAGAVT 325
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 445 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGI 576
T + PF VV R+MA + Y ++ AI +IY ++G+
Sbjct: 262 TAGPICTGPFDVVKTRLMAQGRTGDIKYKGMVHAIRTIYTEEGL 305
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 391 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIV 552
E K+E + KL D ++ + + H +H+ V M + K +S LLG ++
Sbjct: 162 EEKLEKFCKL--MDFVIDSPPPEMRHEYHLSMVDRMKDKVDKSVFWSKLLGIVM 213
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 481 VSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGF 585
+S+ F+G+ E ++LG ++S KDD +L F
Sbjct: 220 LSICQCLMFLGEPETVGNILGKLLSGSKDDALLAF 254
>01_07_0289 + 42540059-42541141
Length = 360
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 217 FQYIKYIKASDGFFGCYRGLSARMLGLIAASQLT 318
+Q + I +DGFFG Y G +A +L + A L+
Sbjct: 197 WQVLLQILQTDGFFGLYAGYAATLLRNLPAGVLS 230
>04_04_0058 - 22416949-22418196
Length = 415
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 193 GGQTGSWTGAEPKARTQAGLKLLRIPWDGIL 101
GG TGS A+P A T A + P D IL
Sbjct: 259 GGDTGSMPQADPVANTIAAAQQAAAPGDAIL 289
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 457 VIAHPFHVVSVRMMASFIGKEEHYSSLLGA 546
V AHP+HV+ + M S G + + + GA
Sbjct: 396 VCAHPYHVLRINKMLSCAGADRLQTGMRGA 425
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 442 QTVAVVIAHPFHVVSVRMMASFIGKEE--HYSSLLGAIVSIYKDDGILGF 585
+ A +I +P VV ++ + HY+ ++ I +Y+ +GI GF
Sbjct: 230 KVAASIITYPHEVVRSKLQEQGRARHGAVHYTGVIDCIKQVYQKEGIPGF 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,629
Number of Sequences: 37544
Number of extensions: 361931
Number of successful extensions: 890
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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