Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e18f
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.043
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.53
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 31 0.53
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.70
SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81) 30 1.6
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5) 29 3.8
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 29 3.8
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_57038| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05) 28 6.6
SB_22043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 27 8.7
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 478 VVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGF 585
+++VRM+ F+GKE Y+ L +I IY + GILGF
Sbjct: 133 LITVRMVVQFVGKEAIYTGLTSSIKEIYNEHGILGF 168
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 448 VAVVIAHPFHVVSVRM-MASFIGKEEHYSSLLGAIVSIYKDDGI 576
V+ IA+P VV RM +A + Y++ + +V++YKDDGI
Sbjct: 185 VSQTIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGI 228
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 448 VAVVIAHPFHVVSVRMMASFIGKEE-HYSSLLGAIVSIYKDDGIL 579
+A+V +P V+ R+ + K HY + A+ +I +++GIL
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGIL 209
>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 214 VFQYIKYIKASDGFFGCYRGLSARML--GLI--AASQLTSKVIVAVGIDLPE-INDPPNI 378
+ Q IKY+ G G + G +L G + AS+ KV V G+DL + IN+PP
Sbjct: 530 ILQLIKYVLKLQGK-GVHCGDEVNLLFDGELNPVASKAQKKVPVPEGLDLDKWINEPPKE 588
Query: 379 VTDDEPKVED 408
+++E ED
Sbjct: 589 TSEEEDNAED 598
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 448 VAVVIAHPFHVVSVRMMASFIGKEE-HYSSLLGAIVSIYKDDGIL 579
+A+V +P V+ R+ + K HY + A+ +I +++GIL
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGIL 478
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 460 IAHPFHVVSVRM-MASFIGKEEHYSSLLGAIVSIYKDDGI 576
+A+P VV RM +A + YS+ + +S+Y +DGI
Sbjct: 123 LAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGI 162
>SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81)
Length = 402
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 84 TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 209
T+ + +P K+F PA V A G+AP P P+H +T
Sbjct: 325 TDPGIDRVPFRRRSKAFAPAKVHAEGAAPAPSPRMHPAHSMT 366
>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
Length = 480
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 84 TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 209
T+ + +PS K+F PA V A G+AP P +H +T
Sbjct: 403 TDPGIDRVPSRRRSKAFAPAKVHAEGAAPAPSPRTHAAHSMT 444
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 451 AVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGF 585
A ++ +P +V R+ I +++ Y+ L+ A IY+D+G+ F
Sbjct: 3 AALLTYPLDMVRARLA---ITQKKKYTGLINAFTRIYRDEGMRTF 44
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 84 TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 209
T+ + +PS K+F PA V A G+AP P +H +T
Sbjct: 621 TDPGIDRVPSRRPSKAFAPAKVHAEGAAPAPSPRTHAAHSMT 662
>SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 114 HGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 209
HGI +P+W G + P W H IT
Sbjct: 66 HGITVMVSPSWYHRHGITAMESPSWYHRHGIT 97
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 114 HGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 209
HGI +P+W G + P W H IT
Sbjct: 108 HGITVMVSPSWYHRHGITAMESPSWYHRHGIT 139
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/119 (20%), Positives = 43/119 (36%)
Frame = +1
Query: 226 IKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDEPKVE 405
+K G G YRGLS+ + G + + + V + N + D+ K+
Sbjct: 86 VKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYL----------KNKMADENGKLT 135
Query: 406 DYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILG 582
+ L + AVV+ P + V+ + Y + +I K +G G
Sbjct: 136 QFQTLASGLGAGVSEAVVVVCPMETIKVKFIHDQTQPNPKYKGFFSGVRTILKTEGFFG 194
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 217 FQYIKYIKASDGFFGCYRGLSARML 291
F ++ I ++GFFG Y+GL+A ++
Sbjct: 180 FSGVRTILKTEGFFGVYKGLTATVI 204
>SB_57038| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)
Length = 375
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 163 EPKARTQAGLKLLRIPWDGILL*QVFV 83
EPK R +G+ +L + W G+L VFV
Sbjct: 37 EPKVRVPSGIFVLNMAWTGVLGAVVFV 63
>SB_22043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 114 HGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT*RFPVYKVHK 239
HGI +P+W G + P W H IT + + H+
Sbjct: 66 HGITVMVSPSWYHRHGITVMVSPSWYHLHGITVMVSLSRYHR 107
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 58 KERIAALPSQILVTTICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYI 237
KE++ A + I + ++LIQ YE + P+ +L +VF IKY+
Sbjct: 2057 KEKLIAKGEKADEAAISEGLNEQEILIQSVYETMVPKLVAEDIPLLQSLLSDVFPGIKYV 2116
Query: 238 KA 243
A
Sbjct: 2117 SA 2118
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 490 RMMASFIGKEEHYS--SLLGAIVSIYKDDGILGF 585
R+ F + +HY S+ GA+ +IYK +G+ G+
Sbjct: 78 RLKILFQAQNKHYKNMSVFGALKAIYKKEGLQGY 111
>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 127 KVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKY 234
K+LIQL Y L+P+ L P +LP+ + Y
Sbjct: 880 KLLIQLSYTWLSPKLKKDLVAGPRTLLPHAASFHGY 915
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,411
Number of Sequences: 59808
Number of extensions: 413845
Number of successful extensions: 1099
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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