Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e18f
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    30   0.015
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    30   0.015
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 391 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 564
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 565 DDG 573
            +G
Sbjct: 266 TEG 268



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 451 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILG 582
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITG 174


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 391 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 564
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 565 DDG 573
            +G
Sbjct: 266 TEG 268



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 451 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILG 582
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITG 174


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 507 YWERRTLQLAVG 542
           +WERRTLQ++ G
Sbjct: 187 FWERRTLQISDG 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 507 YWERRTLQLAVG 542
           +WERRTLQ++ G
Sbjct: 240 FWERRTLQISDG 251


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 124 AKVLIQLGYEP 156
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 70  AALPSQILVTTICHPM 117
           A LPS IL   + HP+
Sbjct: 346 AGLPSAILAMRLSHPL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,875
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)