Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17r
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1; ...    37   0.59 
UniRef50_Q76P25 Cluster: Similar to Mus musculus (Mouse). 12 day...    33   9.5  
UniRef50_Q55A34 Cluster: Putative uncharacterized protein; n=2; ...    33   9.5  

>UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 848

 Score = 36.7 bits (81), Expect = 0.59
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 518 PKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRP-GFPPPLPIKKYKTL 670
           P+ +  +   K    ++TS  TS  AV   HT+  RP GFPP L I K K L
Sbjct: 579 PRSKEQISDEKAGTRNSTSIPTSASAVPNTHTESSRPSGFPPKLNIPKRKNL 630


>UniRef50_Q76P25 Cluster: Similar to Mus musculus (Mouse). 12 days
           embryo spinal ganglion cDNA, RIKEN full-length enriched
           library, clone:D130061K05 product:MEGF11 PROTEIN
           (KIAA1781) homolog; n=5; Dictyostelium discoideum|Rep:
           Similar to Mus musculus (Mouse). 12 days embryo spinal
           ganglion cDNA, RIKEN full-length enriched library,
           clone:D130061K05 product:MEGF11 PROTEIN (KIAA1781)
           homolog - Dictyostelium discoideum (Slime mold)
          Length = 1228

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 419 YMSDFILAAAKSMPKIYYYNTFTYRRPTRVLYHPKGRLVLHPTKVSISSN 568
           Y+  +I A   + PK Y+  TF +  P++ +Y P G  + +PT + I+SN
Sbjct: 392 YVVSYIFARIPN-PK-YFNVTFVHPAPSQTIYFPLGDQLPNPTGIKITSN 439


>UniRef50_Q55A34 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1146

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 455 MPKIYYYN-TFTYRRPTRVLYHPKGRLVLHPTKVSISSN 568
           +P   Y+N TF +  P+R +Y P G    +PT + I+SN
Sbjct: 421 IPNPKYFNVTFVHPAPSRTIYFPLGDQFPNPTGIKITSN 459


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,502,066
Number of Sequences: 1657284
Number of extensions: 11749299
Number of successful extensions: 26486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26452
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)