Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17r
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   6.4  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    25   8.4  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 566 CYLSIPWSGATLIDL*DGIIRGSVSCK*RYY-NSIFLAL 453
           C L+ P+ G + ++L   I +G++SC   +Y + +FL +
Sbjct: 220 CMLTHPFEGRSYLELQRNICQGNLSCWDHHYSDDVFLLI 258


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 617 HPRPGFPPPLPIK 655
           HP P  PPPLP+K
Sbjct: 904 HPTPPPPPPLPVK 916


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 461 KIYYYNTFTYRRPTRVLYHPKGRLVLHPTKVSISSNTS 574
           K++Y++   Y     +    KGR    P ++ +SSN+S
Sbjct: 319 KLHYFDEIGYSHAPLLHCPRKGRCFCKPEEIDLSSNSS 356


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 EISNRLHNTQGRLVRGFHFFTENQK 301
           E S  + NT  +++RG   FTE QK
Sbjct: 198 EFSTEVVNTMVKVLRGTEVFTEQQK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,309
Number of Sequences: 5004
Number of extensions: 50752
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)