Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17r
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    29   3.8  
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232     28   8.8  
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    28   8.8  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   8.8  

>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 129 LGMSCLIIMMLLTFNYYYFYILLRD 55
           L + CLI++++    YY+ Y+LLR+
Sbjct: 80  LDLFCLILLLVFVLPYYHCYLLLRN 104


>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
          Length = 192

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 481 LHLQETDPRIIPS*RSISVAPDQGIDK*QH*CANITESGLCPAHATSAARLPTS 642
           LH     PR++P   S+ V+PD          A++ +S  CPA+++  +   +S
Sbjct: 96  LHSDRPAPRLLPPSTSLLVSPDHSSPP-----ADVKDSTACPANSSKQSNFHSS 144


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 566 NTSARTSQKAVCVQHTQHPRPGFPPPLPIKK 658
           N  ART+ +   V     P P F PP P++K
Sbjct: 312 NNLARTNSELFAVDPPPPPPPPFLPPFPVEK 342


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 265 GQRFSLLHRESKAINLQLVPLLTQ 336
           GQRF  + R+S A NL+L PLL +
Sbjct: 10  GQRFKRIPRQSLAGNLELDPLLNE 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,797
Number of Sequences: 37544
Number of extensions: 320692
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)