Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17r
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 482 FTYRRPTRVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHP 622
           F Y + TR  YHP+    +H T  +I  ++  R  +  V    T HP
Sbjct: 259 FVYNKCTREDYHPENIQAMHGTTAAIFQHSRLRYLRNGVLPAFTGHP 305


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 159 CSFYLIIAYILGMSCLIIMMLLTFNYYYFYILLRD*MCFNL 37
           C +Y  +   + MSC+ +++     YYY   L     C +L
Sbjct: 496 CRYYYFVHVAITMSCISLLLCRASRYYYVVHLAITMSCISL 536


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 461  KIYYYNTFTYRRPTRVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPR--PGF 634
            KIYYY+T T R        P   +V+ P K +      +   +  +  +  + P   PG 
Sbjct: 861  KIYYYHTLTRRTQWD---PPTPEIVVSPRKFTTDMEMDSGDEEPPLKKKKPKTPSTPPGS 917

Query: 635  PPPLPIKKYKT 667
            PP  P   Y T
Sbjct: 918  PPRSPTLAYTT 928


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,920,023
Number of Sequences: 59808
Number of extensions: 386682
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)