Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17r
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3477|AAF51682.1|  314|Drosophila melanogaster CG12976-P...    29   6.5  
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot...    29   8.6  
AE014298-2027|AAN09585.1| 2148|Drosophila melanogaster CG1517-PC...    29   8.6  
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB...    29   8.6  

>AE014296-3477|AAF51682.1|  314|Drosophila melanogaster CG12976-PA
           protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = +2

Query: 326 YSHSSVSNKVRSWQARPPLSWRPAF*SSLHIYMSDFILAAAKS-MPKIYYYNTFT---YR 493
           +SH    +   +    PP  +R  + +  H Y   +  +++ S MP  Y Y  +    Y 
Sbjct: 14  HSHHHPQHLTPTMSHYPPQPYRSGY-TGYHTYGYGYGSSSSASYMPNYYRYAPYASPHYS 72

Query: 494 RPTRVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPI 652
           +  + ++ P G+ ++  + +                  H Q  +PG+ PP P+
Sbjct: 73  QHHQGMFTPAGQQIIPSSVLHYPPRPHPYQQLPQQQQPHPQQSQPGYEPPPPL 125


>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
            protein.
          Length = 1910

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 162  YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
            +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1439 FCTFYVIITYIV-LNLLVAIIMENFSLFY 1466


>AE014298-2027|AAN09585.1| 2148|Drosophila melanogaster CG1517-PC,
            isoform C protein.
          Length = 2148

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 162  YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
            +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1677 FCTFYVIITYIV-LNLLVAIIMENFSLFY 1704


>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
            isoform B protein.
          Length = 2196

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 162  YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
            +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1725 FCTFYVIITYIV-LNLLVAIIMENFSLFY 1752


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,520,506
Number of Sequences: 53049
Number of extensions: 549904
Number of successful extensions: 1337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)