Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e17r
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 31 0.84
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 31 0.84
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 31 0.84
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 30 1.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 30 1.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 30 1.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 30 1.9
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 28 5.9
Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical ... 28 5.9
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1487 FCSFYLIITYIV-LNLLVAIIMENFSLFY 1514
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1465 FCSFYLIITYIV-LNLLVAIIMENFSLFY 1492
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1487 FCSFYLIITYIV-LNLLVAIIMENFSLFY 1514
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1433 FCSFYLIITYIV-RNLLVAVIMENFSLFY 1460
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1467 FCSFYLIITYIV-RNLLVAVIMENFSLFY 1494
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1578 FCSFYLIITYIV-RNLLVAVIMENFSLFY 1605
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 162 YCSFYLIIAYILGMSCLIIMMLLTFNYYY 76
+CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1497 FCSFYLIITYIV-RNLLVAVIMENFSLFY 1524
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 150 YLIIAYILGMSCLIIMMLLTFNYYYFYILL 61
++IIA+I+ +S L + FN Y Y +L
Sbjct: 2 FIIIAFIIALSILFSQFVFYFNLYLLYSIL 31
>Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical
protein R13G10.2 protein.
Length = 824
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 393 QRFNRHFIYTCLTSYWPPLNQCQKYTIIIPS 485
++F + ++ +C Y+ +QC KY+ +I S
Sbjct: 120 EQFVKRYVNSCFLPYYAKCHQCSKYSKLITS 150
>AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical
protein Y6E2A.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 135 YILGMSCL---IIMMLLTFNYYYFYI 67
Y+LGM C +++ LLT N+YY Y+
Sbjct: 48 YVLGMYCSCYGMMLSLLTINFYYRYL 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,532
Number of Sequences: 27780
Number of extensions: 283073
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -