Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e17f
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 31 0.94
11_06_0289 - 21969248-21973516 30 1.6
11_06_0185 + 21018045-21022307 30 1.6
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 1.6
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 2.9
02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250 29 3.8
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.8
12_01_0963 + 9608858-9609538 27 8.7
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 27 8.7
08_01_0056 + 379270-379803 27 8.7
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 8.7
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 8.7
03_05_0048 + 20258561-20259346 27 8.7
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 27 8.7
>07_01_0463 + 3502708-3503535
Length = 275
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 461 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEG 586
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG 223
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 494 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTR 601
+A + ++TH+ E + I +L RLKDH+E EKT+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTK 422
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 494 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTR 601
+A + ++TH+ E + I +L RLKDH+E EKT+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTK 422
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 430 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 573
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 296 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 394
P PR ++ KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176
>02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250
Length = 207
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 601 PGLLNTLKMILETGAQLVDVGLAFFLVGLHLGVESLL 491
PGL+ TLKM GA VG GL++GVE L+
Sbjct: 143 PGLIRTLKMCGSYGATFAAVG------GLYIGVEQLV 173
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 455 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 589
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>12_01_0963 + 9608858-9609538
Length = 226
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 478 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 588
HRRHQGG RR PR + R A + + G GC
Sbjct: 183 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 215
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 314 DSPEKTPSVEEIQEKLKAAEERRRSLE 394
+SPE P + E+ + L+ EE RRS+E
Sbjct: 515 NSPELRPKMSEVTQILQENEEDRRSVE 541
>08_01_0056 + 379270-379803
Length = 177
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 478 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 588
HRRHQGG RR PR + R A + + G GC
Sbjct: 134 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 166
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 406 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDP 522
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 470 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 577
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
>03_05_0048 + 20258561-20259346
Length = 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 337 RRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE 471
+RR R GS E G+ GR E+G+ GG P P+R E
Sbjct: 133 KRRSDRGRGGSCEAEGGDGA--TGRRSGEEGEAAGGRPAPEREKE 175
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 200 WLPLLTDRDFEPAELRPTITTDKPIINVE 114
WLP+L R F PAE+ K I N+E
Sbjct: 104 WLPILERRSFGPAEITEWEELKKVIDNLE 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,504
Number of Sequences: 37544
Number of extensions: 226035
Number of successful extensions: 804
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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