Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e17f
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               37   0.011
SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2)                      30   1.3  
SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_52326| Best HMM Match : M (HMM E-Value=0.38)                        29   2.2  
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   29   3.9  
SB_40386| Best HMM Match : BAR (HMM E-Value=0)                         28   5.1  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   5.1  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)                  27   8.9  
SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)                     27   8.9  
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              27   8.9  

>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = +2

Query: 341 EEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATKEALDAKMET 520
           E++Q+K  A++E    L                    I  EQ        +E +  KME 
Sbjct: 152 EKLQQKFAASKEIIEELRSAKEEKLQAHERRVRVAQSIAQEQIEQQSKLIEEKIMQKMEM 211

Query: 521 HEEKREAYINELRSRLKDHLEGVEKTR 601
            +EKR++Y+  L++RL +    VE+ R
Sbjct: 212 TKEKRDSYMEALKTRLHEKSLDVEQKR 238


>SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2)
          Length = 157

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 188 KVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKA 367
           ++E +    KSTE+R QE       YE   +E   +          +T  +E ++EK + 
Sbjct: 46  ELEPLAEMLKSTELRLQEAQDRLFTYERRASEHTKLIAELTQKVESQTDQLEHMREKYRL 105

Query: 368 AEERRRSLE 394
            ++  RSL+
Sbjct: 106 TQDEYRSLQ 114


>SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 188 KVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKA 367
           ++E +    KSTE+R QE       YE   +E   +          +T  +E ++EK + 
Sbjct: 67  ELEPLAEMLKSTELRLQEAQDRLFTYERRASEHTKLIAELTQKVESQTDQLEHMREKYRL 126

Query: 368 AEERRRSLE 394
            ++  RSL+
Sbjct: 127 TQDEYRSLQ 135


>SB_52326| Best HMM Match : M (HMM E-Value=0.38)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/94 (21%), Positives = 42/94 (44%)
 Frame = +2

Query: 323 EKTPSVEEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATKEAL 502
           +K    + + EK++A EER + LE                   ++  Q    +V+T + +
Sbjct: 42  DKGKESKGLPEKIQALEERNKKLEVQVIKGKQAYDKVTRDQETMK--QRTEALVSTIKEI 99

Query: 503 DAKMETHEEKREAYINELRSRLKDHLEGVEKTRL 604
           + + E+  ++   +  +L SR+K+  E +E   L
Sbjct: 100 EDEKESLIQETHVFKRKLESRIKELTECIEGKEL 133


>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 203 EVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT--PSVEEIQEKLKAAEE 376
           E E   TE + ++   G + +   LA  +GV  P  ADS E+   P     +EK     E
Sbjct: 285 EEENSETEEQPRKPVGGPINFAAELASKIGVAPPPAADSDEEAAEPGAWSDEEKKPQQPE 344

Query: 377 RRRS 388
           ++RS
Sbjct: 345 KQRS 348


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 203 EVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT--PSVEEIQEKLKAAEE 376
           E E   TE + ++   G + +   LA  +GV  P  ADS E+   P     +EK     E
Sbjct: 149 EEENSETEEQPRKPVGGPINFAAELASKIGVAPPPAADSDEEAAEPGAWSDEEKKPQQPE 208

Query: 377 RRRS 388
           ++RS
Sbjct: 209 KQRS 212


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 81   AYRS*SVCCE*FYIYYRFVCCDRRTQFSWFEV 176
            A+   S+ C   Y Y  F CCD  T+ S FE+
Sbjct: 935  AFTPPSLTCHYLYSYRTFQCCDLGTKISPFEM 966


>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +2

Query: 158 VQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRA--DSPEKT 331
           + ++  LC+L V+ +E   KSTE    E++   L   ++ A          A   +PE+ 
Sbjct: 207 MDMIEQLCQLVVDMLEYHKKSTE--SLEIAMSQLNKRIVNARRNQAEAEASAPKQAPEEP 264

Query: 332 PSVEEIQEKLKAAEERR 382
            +V E  EK   ++E +
Sbjct: 265 ENVPEQHEKAPESDEEQ 281


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 249  FDISWQRISVDLVSTSMASTFNRQRLRTS 163
            +DI WQ ++++ ++  +    NR+RL TS
Sbjct: 1447 YDILWQDVNIEKINQELLDFQNRRRLTTS 1475


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 326 KTPSVEEIQEKLKAAEERRR 385
           K P + E+QEKLKA +E RR
Sbjct: 281 KDPKLLELQEKLKAKKEERR 300


>SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +2

Query: 185 LKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLK 364
           + +E  +++ K+  I    ++K     ++++   +   +P  AD   K P  EEI EKLK
Sbjct: 162 ITMEQSQIQLKTINIPLDGINKSPA--QLMIGRRLKTSLPATADLL-KPPGQEEITEKLK 218

Query: 365 AAEERRR 385
             +E+++
Sbjct: 219 KIKEKQK 225


>SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 278 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRS 388
           ++P G P P++  SP+K   +   +  L+AA+  R S
Sbjct: 23  SKPTGKPTPQQFRSPQKVVQISVPRAGLQAAQNARYS 59


>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 VETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEK 328
           +E +  +I C   +K GL   +   +  G P+PRRA  P K
Sbjct: 127 IERQGGKITCAHYNKLGLRVLLKPEKFEGKPIPRRAHPPSK 167


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +2

Query: 215 KSTEIRCQEMSKGGLAYEVI--LAEPVGV 295
           K+TE++CQ +++GG+A   +  + E +GV
Sbjct: 202 KNTELQCQSINRGGVAKASVMYIVEDIGV 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,768
Number of Sequences: 59808
Number of extensions: 252690
Number of successful extensions: 911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)