Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e14f
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 194 6e-50
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 191 3e-49
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 4.0
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 4.0
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.3
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 5.3
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 25 5.9
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 25 5.9
10_08_0694 - 19929918-19930292,19930633-19930866 28 7.0
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 28 7.0
11_03_0171 + 11111534-11113207 27 9.3
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.3
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 194 bits (472), Expect = 6e-50
Identities = 97/195 (49%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Frame = +1
Query: 46 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 225
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 226 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 405
T++Y+ K RAGRGFTL E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 406 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQ 579
A+L++FP + +KV G++ EE ATQ++G MP+ + +SV +T+D K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180
Query: 580 YLRGARSIAKLVGIR 624
LR R + +G R
Sbjct: 181 KLRVERMNQRHIGAR 195
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 191 bits (466), Expect = 3e-49
Identities = 96/195 (49%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Frame = +1
Query: 46 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 225
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 226 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 405
T++Y+ K RAGRGFTL E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 406 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQ 579
A+L++FP + +KV G++ EE ATQ++G MP+ + +SV +T++ K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYA 180
Query: 580 YLRGARSIAKLVGIR 624
LR R + VG R
Sbjct: 181 KLRVERMNQRHVGAR 195
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 122 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 292
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 361 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 489
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 24.6 bits (51), Expect(2) = 5.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 61 NMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNR 159
N +P G W V W N+ ++R +QN+
Sbjct: 221 NNVPEGVLSDQWIALVNHWMNEKSKRI-SEQNK 252
Score = 21.8 bits (44), Expect(2) = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 274 LREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGE 453
+R+ A NP A + + R+ +K++ N++R+ + L KGK KG+
Sbjct: 276 MRQKDPAKKNPHRA-VVYVHTHKRKSDKNINGHVDNLKRLIAEQPALADASKGKTAWKGD 334
Query: 454 A 456
A
Sbjct: 335 A 335
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 24.6 bits (51), Expect(2) = 5.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 61 NMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNR 159
N +P G W V W N+ ++R +QN+
Sbjct: 221 NNVPEGVLSDQWIALVNHWMNEKSKRI-SEQNK 252
Score = 21.8 bits (44), Expect(2) = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 274 LREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGE 453
+R+ A NP A + + R+ +K++ N++R+ + L KGK KG+
Sbjct: 276 MRQKDPAKKNPHRA-VVYVHTHKRKSDKNINGHVDNLKRLIAEQPALADASKGKTAWKGD 334
Query: 454 A 456
A
Sbjct: 335 A 335
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 346 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 516
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 201 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 25
PS W++ + + LLS S++ + +S PI++ +++++ +P+ HF VLP
Sbjct: 35 PSLPVWTFRMWTIG--LLSCAMLSYINQFFSYRSEPIVITQITVQVAALPIGHFLARVLP 92
Query: 24 RQR 16
+++
Sbjct: 93 KRK 95
>11_03_0171 + 11111534-11113207
Length = 557
Score = 27.5 bits (58), Expect = 9.3
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +1
Query: 253 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKE---YRARLILF 423
+ G+G + + G PV R +G R K + + R++ R R +
Sbjct: 436 KGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYW 495
Query: 424 PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNF 567
+K++ + LAT LRG P P+P + E F
Sbjct: 496 SADEKLVVTDF-VNNGNLATALRGEHTPSPSPSPSQFVNLFGKRETYF 542
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 216 YRT*RPSCRTWSYGLSF 166
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,712
Number of Sequences: 37544
Number of extensions: 343802
Number of successful extensions: 833
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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