Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e12r
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    30   0.29 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.66 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.2  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.2  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 698 KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 570
           K KH  + + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 131 KKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 404 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 294
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 419 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 303
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 674 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 582
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 586 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 485
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 25/91 (27%), Positives = 39/91 (42%)
 Frame = -3

Query: 353  ILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKA 174
            +++T  +Q+L +G    P     AFGVNS+   +A  +  P     DN     N   +  
Sbjct: 813  LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV---IDNPL---NVRINAI 866

Query: 173  LTLSRTLETSGNRMAWGYNGRVIGSPEHYAW 81
            L   R+L+     M   Y  R  G P+  +W
Sbjct: 867  LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSW 897


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 321 YQILVTLSVQDLEVDLVVLPQSNELPADF 407
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,225
Number of Sequences: 5004
Number of extensions: 56176
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)