Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e12r
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.9  
Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    28   5.8  

>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 662 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 486
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 662 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 486
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 713 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 609
           D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 207 DFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 713 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 609
           D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 207 DFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,011
Number of Sequences: 27780
Number of extensions: 313255
Number of successful extensions: 1001
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)