Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11r
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 182  TLRPVTFRTLNFVSTTEVGSPSAPIFTVLV 271
            TLRP T   +  V+  E+GS S P  TV +
Sbjct: 960  TLRPATTYHIRIVAENEIGS-SEPSETVTI 988


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 290 HSHCTTQRVR*RWGPMVTRPP 228
           HSH   QR    +GP + R P
Sbjct: 178 HSHSGFQRSDGTFGPFIVRVP 198


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 447 CTNLRYPCSNQHTIMACRMDSWSSITIYPQIWVSTKYCKRAW 572
           C    YP  +   +   R     S+ I P IW ST+     W
Sbjct: 314 CAFSLYPLKSTFYLNVVRPFPERSMGITPMIWNSTRRLFVVW 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,502
Number of Sequences: 336
Number of extensions: 4212
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)