Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11r
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    30   0.29 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.67 
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   1.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   2.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.6  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   3.6  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   3.6  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   3.6  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    26   4.7  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   6.2  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   8.2  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = -1

Query: 570 MLVYNTLLKPKSAGRLLLKTK--NPF-DKPLLYADYYKDIED-LYTVIRAFKQH 421
           ++VY  +++P+S  R +L++    PF  +  +Y DYY DI+D ++ V   F  H
Sbjct: 408 IVVYQEIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIKDQIFGVDVEFLSH 461


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 206 TLNFVSTTEVGS--PSAPIF---TVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHS 370
           T +FV TT   S  P    F   T   G++N +V S+A+H+  +    S  +  + S + 
Sbjct: 154 TTSFVPTTTESSIHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNV 213

Query: 371 SLNPDSLKALVSPNLKLCCLKALITVY 451
           +  P S     SP+  L  +  LI+ +
Sbjct: 214 TTIPSSAVHYASPSGLLALVVMLISAF 240


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 RTLNFVSTTEVGSPSAPIFTVLVGW 277
           + L+ +S   VGSPSAPI   L  W
Sbjct: 523 KNLSLMSYVSVGSPSAPIIEFLEEW 547


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 407 ARPKPSRNLDLSWNGLSWMPAKALIRTATNS*NVLLGKLHSHCTTQRV 264
           + P  S N+D S N LS   +K  +     + N+ LG LH + T  R+
Sbjct: 44  SEPHESANVDESVNKLSKTFSKLSLNPTFQALNMDLGLLHENITLDRI 91


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 471 YKDIEDLYTVIRAFKQHSL 415
           YKD  DLY+ I  FKQ SL
Sbjct: 389 YKDWHDLYSYIERFKQLSL 407


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 501 MDSWSSITIYPQIWVSTKYCKRAW 572
           +DSWSSIT Y    V  +   +AW
Sbjct: 77  VDSWSSITKYDNYTVENESYAKAW 100


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 266 LVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALV 403
           ++G Y+  +  L  H R+ + FL+ L QAS   H  + PD+L+ LV
Sbjct: 356 VLGLYSFLMKYLTPHQRDVTQFLACLAQAS---HEFVPPDALEPLV 398


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 639 FRKHGLSEEVHDKFRKMNENKYTMLVYN 556
           F K+GL+EE+   FRK  E+ +T+   N
Sbjct: 22  FWKNGLAEELELLFRKQCEDTFTLQAIN 49


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 346 AGI-QLNPFQLKSRFLEGFGLAQSQTMLFES 435
           AG+ QLN F L   F+EG+  +Q+  ++F++
Sbjct: 10  AGLKQLNDFLLDKSFIEGYEPSQADAVVFKA 40


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 477 DYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDK 331
           D   D  D+Y  +RAFK+ +L  G     ++   KL    LD+  +F +
Sbjct: 95  DLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSKLRQ-RLDSILNFSR 142


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 261  VKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIM 121
            V  GADGD    +DT L    VT    ++ S     +   T AP+ +
Sbjct: 1575 VYYGADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTL 1621


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 558 NTLLKPKSAGRLLLKTKNPFDKPLLYADYYKD 463
           N   K  +AG +L++ +   D P+L+  +YKD
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKD 701


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 390 KESGFKLEWIELDACKSFDKNSDEFLECI 304
           +++G K  W E++  K+   + DE LECI
Sbjct: 67  EQNGGKFGWFEVEDFKNTYGSWDESLECI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,819
Number of Sequences: 5004
Number of extensions: 71588
Number of successful extensions: 241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)