Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11r
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    91   7e-19
AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical...    30   1.4  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   3.3  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   3.3  
U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine rece...    29   3.3  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    29   3.3  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        28   5.8  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    28   5.8  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    28   5.8  
Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
 Frame = -1

Query: 630 HGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDL 451
           H L   VHD  R  N   +   V+   ++ +S G ++L+ K+P   P++  +Y ++  D 
Sbjct: 410 HFLPSTVHDDGRT-NGTCHGYQVHVGPMRSQSKGYIMLQAKDPRRAPIINPNYMEEDSD- 467

Query: 450 YTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAREITFSLYHP 271
           +   R   + S  L  +KAF E   K E      C+S D + D F+    +E   S YHP
Sbjct: 468 WREFRKCIRVSRELFASKAFDEFRGK-ELAPGPDCQS-DADIDRFV----KEKAASAYHP 521

Query: 270 TSTVKMGADGDPTSVVDTK-LRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMI 94
           + T KMG++ D  +VV+ + + V     L+V+DAS+MPS++ GN NAP IM+ E+ AD+I
Sbjct: 522 SCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLI 581

Query: 93  K 91
           K
Sbjct: 582 K 582


>AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical
           protein T03D3.1 protein.
          Length = 515

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -1

Query: 477 DYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAR 298
           DY+K   + ++    F++    LGE + F ESG++L  I ++  K       EFL+    
Sbjct: 79  DYWKKNANHFS--NMFEKSPTPLGEFEIFHESGYQLCKIAINDLKLI-----EFLKSGKY 131

Query: 297 EITFSL-YHPTSTVKMGADGDPT 232
           +I FS  Y P   + M A G P+
Sbjct: 132 DIGFSSDYDPCGNILMTAAGIPS 154


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 630  HGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKPLL 484
            H L  +     RK  +N  +  V   LL    A   L++ K PFDKPLL
Sbjct: 1754 HPLRVKFSSMCRKQGKNSMSRAVLRELLS-LPANSDLVRAKAPFDKPLL 1801


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 630  HGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKPLL 484
            H L  +     RK  +N  +  V   LL    A   L++ K PFDKPLL
Sbjct: 1754 HPLRVKFSSMCRKQGKNSMSRAVLRELLS-LPANSDLVRAKAPFDKPLL 1801


>U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein7 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 248 APIFTVLVGWYNENVISLAI 307
           APIF + +GW+N NV ++A+
Sbjct: 272 APIFGIDIGWWNTNVSTIAL 291


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 290 VISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSP 409
           +I LAI S    + +  L QAS  I +SL P SL  L++P
Sbjct: 289 IICLAILSMTGCVLMIGLAQASWLIFASLAPGSLHGLLNP 328


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 278 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 391
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 278 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 391
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 278 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 391
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 284 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 321


>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 471 SNQHTIMACRMDSWSSITIYPQIWVS 548
           +++ TI A  + +WSS TIYP I +S
Sbjct: 175 TDRPTICAILIGAWSSFTIYPFILIS 200


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = +2

Query: 353  SNSIHSSLNPDSLKALVS------PNLKLCCLKALITVYKSSISL**SAY---NNGLSNG 505
            +NS+H ++  DSL  +VS       NL  CC +    V+ SSI+    +Y   N   SNG
Sbjct: 5076 NNSLHENVKRDSLDEMVSIKLQGAKNLMKCCDETSHFVFSSSIANVLGSYGQSNYAFSNG 5135

Query: 506  FL 511
             +
Sbjct: 5136 LV 5137


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 606 DKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKPLLYADY 472
           D FR+   + +  LV+NT+   K A  +L K+K       LY D+
Sbjct: 577 DSFRRKKNSNFGWLVFNTVADCKKAHDVLSKSK--IQGKALYVDF 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,228
Number of Sequences: 27780
Number of extensions: 389346
Number of successful extensions: 1151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)