Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11f
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   1e-11
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
 Frame = +3

Query: 249 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGTSE-DWAY 422
           +D++            NRLS   D KVLL+EAG    T    +P     N+   + +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223

Query: 423 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYD 557
           HT PQ    +   N+    PRG+V GGSSS+N M Y+RG+  DYD
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYD 264


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 234 LEDP--NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGT 404
           LEDP  +YDFI            NRL+     +VL++EAG    ++   IP   +S +  
Sbjct: 4   LEDPLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAG-FSKLLV 62

Query: 405 SEDW 416
           + DW
Sbjct: 63  NPDW 66


>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 199 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 330
           +TY  P LPT F KI     T+TSS+++    D    I+L K     C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,261,130
Number of Sequences: 59808
Number of extensions: 347413
Number of successful extensions: 936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)