Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11f
         (561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    62   1e-09
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    46   9e-05
D31897-1|BAA06695.1|  400|Homo sapiens Doc2 protein.                   31   2.1  
BC063436-1|AAH63436.1|  400|Homo sapiens DOC2A protein protein.        31   2.1  
BC055284-1|AAH55284.1|  400|Homo sapiens double C2-like domains,...    31   2.1  
BC041769-1|AAH41769.2|  400|Homo sapiens DOC2A protein protein.        31   2.1  
BC119640-1|AAI19641.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    31   3.7  
BC119639-1|AAI19640.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    31   3.7  
AF141315-1|AAD48406.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    31   3.7  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 62.1 bits (144), Expect = 1e-09
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
 Frame = +3

Query: 249 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAG------GNPTLATEIPQPYYSNMGTSE 410
           Y ++             RL+E    +VLL+EAG      G+  L+ +I  P        +
Sbjct: 41  YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIHMPAALVANLCD 100

Query: 411 D---WAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYD 557
           D   W YHTE Q G       +   WPRG+V GGSSS+N M YVRG+  DY+
Sbjct: 101 DRYNWCYHTEVQRGL----DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYE 148


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 46.0 bits (104), Expect = 9e-05
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +3

Query: 477 WPRGKVLGGSSSINLMFYVRGNKADYD 557
           WPRG+V GGSSS+N M YVRG+  DY+
Sbjct: 10  WPRGRVWGGSSSLNAMVYVRGHAEDYE 36


>D31897-1|BAA06695.1|  400|Homo sapiens Doc2 protein.
          Length = 400

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 188 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 66
           + L   E  QGLLE+R R L+++ YSSR R     + R  HL A+
Sbjct: 237 KDLEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281


>BC063436-1|AAH63436.1|  400|Homo sapiens DOC2A protein protein.
          Length = 400

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 188 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 66
           + L   E  QGLLE+R R L+++ YSSR R     + R  HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281


>BC055284-1|AAH55284.1|  400|Homo sapiens double C2-like domains,
           alpha protein.
          Length = 400

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 188 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 66
           + L   E  QGLLE+R R L+++ YSSR R     + R  HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281


>BC041769-1|AAH41769.2|  400|Homo sapiens DOC2A protein protein.
          Length = 400

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 188 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 66
           + L   E  QGLLE+R R L+++ YSSR R     + R  HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281


>BC119640-1|AAI19641.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 519
           +L+HR+G+V + T  R    H+V CS E+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


>BC119639-1|AAI19640.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 519
           +L+HR+G+V + T  R    H+V CS E+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


>AF141315-1|AAD48406.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 519
           +L+HR+G+V + T  R    H+V CS E+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,149,427
Number of Sequences: 237096
Number of extensions: 1773593
Number of successful extensions: 7281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7280
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)