Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e11f
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    57   8e-09
AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical...    28   4.0  
AF039047-5|AAY86265.1|  188|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +3

Query: 297 NRLSEISDWKVLLVEAGG-NPTLATEIPQP---YYSNMGTSEDWAYHTEPQEGACRAYKN 464
           NRL+E    +VLL+EAG  +      I  P    Y+    + +W YHT  Q+       N
Sbjct: 54  NRLTEDPSNRVLLIEAGPVDHKWDWRIHMPAALMYNLCSDTYNWHYHTTAQKNL----GN 109

Query: 465 KGCAWPRGKVLGGSSSINLMFYVRGNKADYD 557
           +   WPRG+V GGSS++N M YVRG+  DY+
Sbjct: 110 RVFYWPRGRVWGGSSTLNAMCYVRGHAYDYN 140


>AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical
           protein F49F1.11 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 393 NMGTSEDWAYH--TEPQEGACRAYKNKGCAWPRGKVLGGS 506
           N+  S+ W +H  +EP +G     ++   AW  G+  GG+
Sbjct: 129 NLAKSKVWVFHFASEPTKGLVARTRHTNGAWEVGETYGGN 168


>AF039047-5|AAY86265.1|  188|Caenorhabditis elegans Hypothetical
           protein K11D12.13 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 390 SNMGTSEDWAYHTEPQEGACRAYKNKGC 473
           SN        YH +P+   C A+K +GC
Sbjct: 32  SNCSYEASIRYHFDPKTNICHAFKYEGC 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,576
Number of Sequences: 27780
Number of extensions: 249174
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)