Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e10f
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.0  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -2

Query: 490 VELSSEYYASTHQAPLSFI*TDTIKSVC---LHVSERIW---IKVIRVRNKID 350
           V+ SSE  +++     +F+  D ++ VC   + V  + W   IKVI V NK+D
Sbjct: 105 VDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMD 157


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 367 VRNKIDS*WIITRNFQTISGKSIIMNTIVRSLIFDFT*PWLNLQIGG 227
           VRNK+    ++T N   IS +S I+  ++ +   DFT P  NL+  G
Sbjct: 74  VRNKVYD--LLTSN---ISSESAILEDMISANATDFTVPQTNLETTG 115


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 IITRNFQTISGKSIIMNTIVRSLI 269
           ++   F T   K II+NTIV S I
Sbjct: 172 VVIETFSTRLNKKIILNTIVTSFI 195


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 IITRNFQTISGKSIIMNTIVRSLI 269
           ++   F T   K II+NTIV S I
Sbjct: 172 VVIETFSTRLNKKIILNTIVTSFI 195


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 525  SVFRIINKFKT-LSSYLPNIMPVLIKHLYHLSKLIL 421
            SV R++       +SY     P+L+ H YHL K +L
Sbjct: 1025 SVRRVLGDLPDGFTSYFVEKFPMLLLHCYHLVKDVL 1060


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 IITRNFQTISGKSIIMNTIVRSLI 269
           ++   F T   K II+NTIV S I
Sbjct: 172 VVIETFSTRLNKKIILNTIVTSFI 195


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 IITRNFQTISGKSIIMNTIVRSLI 269
           ++   F T   K II+NTIV S I
Sbjct: 172 VVIETFSTRLNKKIILNTIVTSFI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,993
Number of Sequences: 5004
Number of extensions: 46673
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)