Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e10f
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41...    29   4.1  
11_06_0405 + 23183366-23185558                                         28   5.4  
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238...    28   7.2  

>11_01_0054 +
           416626-417297,417757-417885,418197-418301,418385-418778,
           419186-419283,419366-419614,419784-419843
          Length = 568

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 346 MNLSYCEPV*P-LSKSFRTHANIQTL 420
           +NLSYC PV P +S SF     +QTL
Sbjct: 295 LNLSYCSPVTPSMSSSFEMIHKLQTL 320


>11_06_0405 + 23183366-23185558
          Length = 730

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 89  ILTNYSIL*YYIVYEYLTTKLKKPHGFIRVQFVIEIHLCYSLGHKLP 229
           +L NYS++ Y +    L++  +KP  F +V  V+ + L YS+   +P
Sbjct: 59  LLLNYSLVHYTLGLMQLSSSDEKPDDFFQVWAVLLVTLQYSVRIGIP 105


>01_04_0137 +
           16522157-16522601,16522658-16522712,16523655-16523807,
           16525750-16525944,16526096-16526618,16526712-16527103,
           16527201-16527270,16527471-16527506,16527818-16527892
          Length = 647

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 273 RERTIVFIIIDLPDIVWKFRVIIHYESILLRTRITFIQILSDTCK 407
           RER + +++ D  + +W F +  H E  L    ++ +    D+CK
Sbjct: 271 RERQVYYMLSDRENRIWYFVLFFHKEFTLTWKGLSTLLGFHDSCK 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,697
Number of Sequences: 37544
Number of extensions: 237159
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)