Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e10f
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26026| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                28   7.4  
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   27   9.7  

>SB_26026| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 396

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 395 RKDLD-KGYTGSQ*DRFIMDY--YTKLPDNIG*IYYNEYDSTFSD 270
           R++ D K  T S+ D ++ D   YT+L D IG I YNE+ +   D
Sbjct: 145 RQERDQKKKTPSKEDDYVEDVLDYTELEDYIGDILYNEFHTLAED 189


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +2

Query: 179 QFVIEI--HLC--YSLGHKLPADL*I*PWLRKIKDQRTYYRIHYNRFTRYCL 322
           QF ++I  H C  Y + ++LP  + +   LR  ++ ++Y  +H+N   + CL
Sbjct: 44  QFFLQISNHSCVYYFIKNQLPGGVMMEKILRGTQNDKSYDFVHFNEIMKECL 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,252
Number of Sequences: 59808
Number of extensions: 314640
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)