Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e10f
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical...    29   3.7  
Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U55365-1|AAA98567.1|  127|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical
           protein Y60A3A.4 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 71  IVLLYFILTNYSIL*YYIVYEYLTTKLKKPHGFIRVQFVIEIHLCYSL 214
           I+ L F++    IL   +++ YLT    +    +R+Q +  I +C+ L
Sbjct: 195 IISLIFVVCPQIILFVLLIFRYLTQTRSQSPATLRLQLLFFIAMCFQL 242


>Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical
           protein T24D1.4 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = +3

Query: 159 PTASYVFNL*L-----KFTCATLWAINYPPICRFNHGYVKSKIRERTIVFIIIDLPDIVW 323
           P A YV ++ L     ++  + L     P  CRF   +V+ +I    I     DL   VW
Sbjct: 74  PPALYVISMPLCGGNERYANSILLFFAIPAFCRFRRMFVRVRIPTLKIYLKNTDLQQDVW 133

Query: 324 KFRVIIHYESILLRTRITF 380
               I+    IL+ + I F
Sbjct: 134 LTASIVGMLPILISSSILF 152


>Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical
           protein R08H2.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 374 YTGSQ*DRFIMDYYTKLPDNIG*IYYNEYDSTFSDL*FYVTMVKSTD 234
           YT S    FI   Y    D++G +YY+ Y ST   L     +VKSTD
Sbjct: 305 YTASN-RPFINLIYEVYGDSMG-VYYSSYGSTTKGLLMEYEVVKSTD 349


>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 146 KLKKPHGFIRVQFVIEIHLCYSLGHKLP 229
           K+K P G+I+    I+I LC++ G  +P
Sbjct: 65  KIKTPVGYIKPDETIDIPLCHNPGKAIP 92


>U55365-1|AAA98567.1|  127|Caenorhabditis elegans Hypothetical
           protein C12D5.5 protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 254 LRKIKDQRTYYRIHYNRFTRYCLEVSCNNPL 346
           + KI   +T   I Y  F  YC E  CN P+
Sbjct: 81  MEKILYDKTQPDIFYEAFLCYCTEDKCNKPI 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,484
Number of Sequences: 27780
Number of extensions: 246848
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)