Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e10f
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 266  KDQRTYYRIHYNRFTRYCLEVSCNNPL*IYLIANPYNLY 382
            K Q  +  IHY   + Y  E+S   PL +++ + P N Y
Sbjct: 922  KTQDGFGPIHYGVCSNYLREISDGEPLYVFVRSAP-NFY 959


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 33  KTRLLLQLNITNELF 77
           K RLLLQ NI N+LF
Sbjct: 61  KLRLLLQGNINNQLF 75


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 257 RKIKDQRTYYRIHYNRFTRYCLEVSCNN 340
           ++I+ Q  YY +H    TRY LE   N+
Sbjct: 254 KEIRGQ-LYYFLHKQLMTRYFLERMSND 280


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 257 RKIKDQRTYYRIHYNRFTRYCLEVSCNN 340
           ++I+ Q  YY +H    TRY LE   N+
Sbjct: 254 KEIRGQ-LYYFLHKQLMTRYFLERMSND 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,503
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)