Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e08r
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    48   2e-06
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    37   0.004
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   5.4  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    25   9.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.4  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
 Frame = -3

Query: 724 NPEVQDKLVXE-IKENKERXNGKFDYNSIQNMVYLDMVVSELLRLWPPGVSMDRICVQDY 548
           +P+V  K+  E ++  K   +     + ++ M Y   VV E LRL PP      + +  Y
Sbjct: 338 HPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPP------VLMVPY 391

Query: 547 NLGKPNDKAKRDFILRKGTGVAIPVWAFHRNPEFFPDPLKFDPERFSEENKHNIKPFAYL 368
            + K       D+ + K   V   ++    + + +P+P  F+P+R++        P  ++
Sbjct: 392 RVKKAFPITP-DYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNGLAEQSPKNWM 450

Query: 367 PFGVGPRNCIGSRFAL 320
            FG GP  C+G R+A+
Sbjct: 451 VFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
 Frame = -3

Query: 721 PEVQDKLVXEIKENKERXNGKFDYNSIQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNL 542
           PE+ + L  E K      N +  ++  ++M  L+ V+ E LRL PP  S  R   +D  L
Sbjct: 308 PEIIEMLWEEQKRVVGE-NLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRD--L 364

Query: 541 GKPNDKAKRDFILRKGTGVAIPVWAFHRNPEFFPDPLKFDPERFSE-----ENKHNI--- 386
             P  K     ++     +           E+F     FDP+R+++     EN   I   
Sbjct: 365 PVPGSK----IVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYG 420

Query: 385 -----KPFA--YLPFGVGPRNCIGSRFA 323
                K  A  YLPFG G   CIG +FA
Sbjct: 421 YGLVTKGAASPYLPFGAGRHRCIGEQFA 448


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = -3

Query: 787 FLRXCFEPFIGNDVPPSRXALNPEVQDKLVXEIKEN 680
           F R C+E  I +++PP+  AL+P ++ +++ EI EN
Sbjct: 149 FERLCYESAIASNLPPN--ALSP-LEAEMLSEILEN 181


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 573 WIESAFKTTTWGNQMTRPKETSYFAK 496
           WI++ F++T  GN      +T +F+K
Sbjct: 480 WIQNRFQSTVLGNMEDIQSQTEFFSK 505


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 632 HILYGVVVKFSIXPLLVLLDFXNQFVLYF 718
           H+L+ +V  +S  P +V +   NQFV ++
Sbjct: 134 HLLFNMVAFYSFAPAIVDVFGNNQFVAFY 162


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 367 VDTRKA*CCVCSPLRTF 417
           V+T +A CC+CS L  F
Sbjct: 595 VETGRAICCICSSLHKF 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,878
Number of Sequences: 5004
Number of extensions: 64930
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)