Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e08f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.36 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    29   0.62 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   1.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   4.4  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   4.4  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   5.8  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   5.8  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    25   7.7  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   7.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 343  KINHFVDDISQLYNKFPEERFVGRYEFVNP 432
            ++ + V+ + +L NKFP+  F GR   + P
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRIGVITP 1538


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 138 SEQQENKKEIINYQTEQKKR 197
           + + EN K+IINYQTE+K +
Sbjct: 266 ANKDENIKKIINYQTEEKNK 285


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 450 VSDVDHRIYKLISTNESFFWK 388
           VS V H  YKL+S+NE   WK
Sbjct: 324 VSQVSHHWYKLVSSNEE-LWK 343


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 356 KWLILKTILPMLPSIGSGVMLLISCLLK*QYICFRYSKKAKPIANVH 216
           +WL+L T     P  G    L ++C     Y+ F YS ++K I   H
Sbjct: 479 EWLLLLTRKVFSPEFG----LFVNCEESSNYLWFNYSHRSKEIDYYH 521


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 474 CDSLYDLNVSDVDHRIYKLISTNESFFWKFVVQLRNI 364
           C +++   V+ ++  I K+ +    F ++FV  LRN+
Sbjct: 303 CMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNL 339


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 259 QIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQL--YNKFPEE 399
           Q++CYFS+H   S   +P+      +   IN+ VDD  ++  Y  +P E
Sbjct: 312 QMFCYFSQH--VSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIE 358


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 334 IVFKINHFVDDISQLYNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLD 501
           +V KI+   +DIS   + FP   F    + VNPV Y  D       T++D   F+D
Sbjct: 409 VVAKIDATENDISVSISGFPTIMFFKANDKVNPVRYEGD------RTLEDLSAFID 458


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 171 NYQTEQKKRYNDYHYMDISYRFGFLTVPE 257
           NY T +K   NDY ++  S   GF+ + +
Sbjct: 10  NYTTSEKIGLNDYRHVHESLGIGFIALED 38


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 364 DISQLYNKFPEERFVGRYEFVNP 432
           DIS+L N  PE+   G  E  NP
Sbjct: 47  DISKLANPVPEDSSTGPTEIANP 69


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 364 DISQLYNKFPEERFVGRYEFVNP 432
           DIS+L N  PE+   G  E  NP
Sbjct: 47  DISKLANPVPEDSSTGPTEIANP 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,436
Number of Sequences: 5004
Number of extensions: 44850
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)