Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e08f
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)              38   0.006
SB_15630| Best HMM Match : p450 (HMM E-Value=0)                        32   0.28 
SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         30   1.5  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     29   2.0  
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   29   2.6  
SB_28895| Best HMM Match : p450 (HMM E-Value=0)                        29   2.6  
SB_6774| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_15132| Best HMM Match : DUF904 (HMM E-Value=5.3)                    28   6.1  
SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)                   28   6.1  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_34129| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=4.7)            27   8.0  
SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   8.0  
SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16)         27   8.0  
SB_44744| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16)         27   8.0  

>SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +1

Query: 217 WTLAIG-LAFLLYLKQI--YCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLY 381
           W LAI  L  LLY   +  Y       +K   P P +GN+ ++     ++      S++Y
Sbjct: 3   WLLAIAVLLVLLYWNGVKNYSILKNEPLKGPEPWPYIGNLLEVGKYGGLHKMQLHFSKIY 62

Query: 382 NKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLDHRTIV 516
            +   + F+GR     P I + D EI+K+I +K+F  F D    +
Sbjct: 63  GRV-YKLFIGRA----PTIVVSDPEIIKQILLKEFNKFPDRPAFI 102


>SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +1

Query: 217 WTLAIG-LAFLLYLKQI--YCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLY 381
           W LAI  L  LLY   +  Y       +K   P P +GN+ ++     ++      S++Y
Sbjct: 19  WLLAIAVLLVLLYWNGVKNYSILKNEPLKGPEPWPYIGNLLEVGKYGGLHKMQLHFSKIY 78

Query: 382 NKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLDHRTIV 516
            +   + F+GR     P I + D EI+K+I +K+F  F D    +
Sbjct: 79  GRV-YKLFIGRA----PTIVVSDPEIIKQILLKEFNKFPDRPAFI 118


>SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)
          Length = 440

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
 Frame = +1

Query: 223 LAIGLAFLLYLKQIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQLYNKFPEER 402
           LA+ +  +LY   +Y Y     I +   LP    +   +  ++  +    Q+  +F E R
Sbjct: 20  LALSICVILYAYFVYPYLRSTMIATTGDLPGPTAL-PFIAHLHDLIRHKGQILKQFQEYR 78

Query: 403 F-VGRYEFV-----NPVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDP 534
              GR   +      P + + D EIVK I +K+F  F D  + V E+ +P
Sbjct: 79  KKYGRLYAMFLVGKKPCVVVADPEIVKHIMVKEFSSFRDRPSFVMEQPEP 128


>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
          Length = 965

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
 Frame = +1

Query: 223 LAIGLAFLLYLKQIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQLYNKFPE-- 396
           LA+ +  +LY   +Y Y     I +   LP    +   +  ++  +    Q+ N+F E  
Sbjct: 20  LALIICAILYAYFVYPYLRSTMIAATGDLPGPTAL-PFIAHLHDLIRHKGQMQNQFQEYY 78

Query: 397 ERFVGRYEFV----NPVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDP 534
           +++   Y        P + + D +IVK I +K+F  F D  +   E+ +P
Sbjct: 79  KKYGRLYAMFLVGKKPSVIVGDPDIVKNIMVKEFSSFQDRPSFDLEQQEP 128


>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +1

Query: 202 MIIIIWTLAIGLAFLLYLKQIYCYFSKHEIKSITPLPILGNMGKIVFK--INHFVDDISQ 375
           M+ ++  L +  A   Y    Y   +   +K   P P +GN+  +     ++  +    +
Sbjct: 1   MLWLVILLPVLAAVYWYGVSRYSILANEPLKGPNPWPYIGNLLDVKKHGGMHKMLMHYFK 60

Query: 376 LYNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHF 495
            Y +   + F+GR       I + D EIVK+I IK+F  F
Sbjct: 61  AYGRV-HKMFIGRAA----AIVVSDPEIVKQIVIKEFHKF 95


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -1

Query: 382 CTIEKYHQQNG*S*RQSCPCCPVSEAGLCS-*FHAC*SSNI--SASGTVRKP 236
           CT E YH   G S  Q   CCP+  A  CS   H C    I     G V++P
Sbjct: 828 CTCEPYHTCCGSSSAQQ-HCCPLPNASCCSDGLHCCPQGFICDDQKGCVKQP 878


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 126 KRL*SEQQENKKEIINYQTEQKKRYNDYHYMDISYRFGFLTVPEADILLLQQA*NQE 296
           + L  EQ++  KE  N     K +  DYH + ++ R     V +AD+L + +  ++E
Sbjct: 21  RELGEEQRQEIKEAFNLFDTDKDQAIDYHELKVAMRALGFDVKKADVLKIMKDYDRE 77


>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
          Length = 492

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 202 MIIIIWTLAIGLAFLLYLKQIYCYFSKHEIKSITPLPILGNMGKIVFKINHF 357
           M++    L + + FLLY+ +     S +     TPLP++GN+  I     HF
Sbjct: 1   MLVEAVLLFVSVVFLLYIYRYITAGSTNMPPGPTPLPLIGNLLSIKSSNIHF 52


>SB_6774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 126 KRL*SEQQENKKEIINYQTEQKKRYNDYHYMDISYRFGFLTVPEADILLLQQA*NQE 296
           + L  EQ++  KE  N     K +  DYH + ++ R     V +AD+L + +  ++E
Sbjct: 21  RELGEEQRQEIKEAFNLFDTDKDQAIDYHELKVAMRALGFDVKKADVLKIMKDYDRE 77


>SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 295 SITPLPILGNMGKIVFKINHFVDDISQLYNKFPEERFVGRYEFVNPVIYIRDIEIVKRIT 474
           ++TP P+LG+     + +  F +D  + Y  F +E      E++    + +   I KRI 
Sbjct: 51  ALTPFPLLGHNRNFAYGMTMFENDDIEFY--FEKENQNNPNEYLTEKGFEKYKFIEKRIK 108

Query: 475 IKD 483
           IKD
Sbjct: 109 IKD 111


>SB_15132| Best HMM Match : DUF904 (HMM E-Value=5.3)
          Length = 74

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 147 VVQIRDVSHVSNINIKSLLN 88
           V Q+R ++H+ N+N+K+L N
Sbjct: 49  VKQLRKIAHIQNVNLKALKN 68


>SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)
          Length = 276

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 442 CRSPDLQTHIYQRIFLLEICCTIE 371
           CR P L   I QR+  LE CC  E
Sbjct: 156 CRLPYLHCSINQRLLTLETCCGYE 179


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 444  DVDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
            D+ HRI + ++T     WK    LRN +NK+V
Sbjct: 1950 DIAHRIARKLNTERH--WKTYRNLRNKVNKLV 1979


>SB_34129| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=4.7)
          Length = 254

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 444 DVDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
           D+ HRI + ++T     WK    LRN +NK+V
Sbjct: 79  DIAHRIARKLNTERH--WKTYRNLRNKVNKLV 108


>SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 630

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 444 DVDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
           D+ HRI + ++T     WK    LRN +NK+V
Sbjct: 79  DIAHRIARKLNTERH--WKTYRNLRNKVNKLV 108


>SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16)
          Length = 525

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 444 DVDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
           D+ HRI + ++T     WK    LRN +NK+V
Sbjct: 350 DIAHRIARKLNTERH--WKTYRNLRNKVNKLV 379


>SB_44744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 442 CRSPDLQTHIYQRIFLLEICCTIE 371
           CR P L   I QR+  LE CC  E
Sbjct: 52  CRLPLLHCSINQRLLTLETCCGYE 75


>SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16)
          Length = 399

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 444 DVDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
           D+ HRI + ++T     WK    LRN +NK+V
Sbjct: 350 DIAHRIARKLNTERH--WKTYRNLRNKVNKLV 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,782
Number of Sequences: 59808
Number of extensions: 294392
Number of successful extensions: 961
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)