Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e08f
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z92827-8|CAB07330.1| 527|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z54269-5|CAA91023.1| 527|Caenorhabditis elegans Hypothetical pr... 34 0.081
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 31 0.43
U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine rece... 31 0.76
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z81513-1|CAB04174.1| 346|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical pr... 27 7.0
U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical pr... 27 7.0
U61952-2|AAB03160.1| 509|Caenorhabditis elegans Cytochrome p450... 27 7.0
Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 33.9 bits (74), Expect = 0.081
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 250 YLKQIYCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLYNKFPEERFVGRYEF 423
Y K I+ Y+ + I LP +GN + V K ++ I + KF + G YE
Sbjct: 17 YFKWIHTYWRRRGISGPEGLPFIGNYYDLADVNKPRGYL--IHKWTQKF--GKVFGYYEG 72
Query: 424 VNPVIYIRDIEIVKRITIKDFEHF 495
PV+ + D+++++ + +K F++F
Sbjct: 73 AVPVLVVSDMDMLQELFLKKFDNF 96
>Z92827-8|CAB07330.1| 527|Caenorhabditis elegans Hypothetical
protein F02C12.5a protein.
Length = 527
Score = 33.9 bits (74), Expect = 0.081
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 250 YLKQIYCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLYNKFPEERFVGRYEF 423
Y K I+ Y+ + I LP +GN + V K ++ I + KF + G YE
Sbjct: 17 YFKWIHTYWRRRGISGPEGLPFIGNYYDLADVNKPRGYL--IHKWTQKF--GKVFGYYEG 72
Query: 424 VNPVIYIRDIEIVKRITIKDFEHF 495
PV+ + D+++++ + +K F++F
Sbjct: 73 AVPVLVVSDMDMLQELFLKKFDNF 96
>Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 33.9 bits (74), Expect = 0.081
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 250 YLKQIYCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLYNKFPEERFVGRYEF 423
Y K I+ Y+ + I LP +GN + V K ++ I + KF + G YE
Sbjct: 17 YFKWIHTYWRRRGISGPEGLPFIGNYYDLADVNKPRGYL--IHKWTQKF--GKVFGYYEG 72
Query: 424 VNPVIYIRDIEIVKRITIKDFEHF 495
PV+ + D+++++ + +K F++F
Sbjct: 73 AVPVLVVSDMDMLQELFLKKFDNF 96
>Z54269-5|CAA91023.1| 527|Caenorhabditis elegans Hypothetical
protein F02C12.5a protein.
Length = 527
Score = 33.9 bits (74), Expect = 0.081
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 250 YLKQIYCYFSKHEIKSITPLPILGNMGKI--VFKINHFVDDISQLYNKFPEERFVGRYEF 423
Y K I+ Y+ + I LP +GN + V K ++ I + KF + G YE
Sbjct: 17 YFKWIHTYWRRRGISGPEGLPFIGNYYDLADVNKPRGYL--IHKWTQKF--GKVFGYYEG 72
Query: 424 VNPVIYIRDIEIVKRITIKDFEHF 495
PV+ + D+++++ + +K F++F
Sbjct: 73 AVPVLVVSDMDMLQELFLKKFDNF 96
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 405 ESFFWKFVVQLRNIINKMVNLEDNLAHVAQYRKRGYALDFMLAEVAIYLLQVQ 247
E +FWK+ Q++ +IN N D H ++ R LDF ++ AI + VQ
Sbjct: 543 EKYFWKYGQQVQIVIN---NAPDLRNHTSRDRVHAMVLDFATSKHAIGMESVQ 592
>U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein36 protein.
Length = 300
Score = 30.7 bits (66), Expect = 0.76
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Frame = +1
Query: 205 IIIIWTLAIGLAFLLYLKQIY-C--YFSKHEIKSITPLPI------LGNMGKIV-FKINH 354
+II ++ + LAFL L QIY C Y++K T LPI G++GK++ F I +
Sbjct: 122 VIIAFSFILSLAFLTILFQIYPCQMYYNKELGLVYTDLPICMTYSKYGDIGKLISFSIFN 181
Query: 355 FVDDISQLYNKFPEERFVGRYEFVNPVI 438
+ D ++ G+++F N I
Sbjct: 182 VIIDTITVWKVRKVRSQHGKHKFTNKEI 209
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
protein F40F12.5 protein.
Length = 1144
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 379 YNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHF 495
+ KFPE+ G ++F NP+ + + +T DF++F
Sbjct: 5 FAKFPEQS-AGSHQFRNPLDELTGSNTITNLTAHDFDYF 42
>Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical
protein K10D11.2 protein.
Length = 340
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 229 IGLAFLLYLKQIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQLYNKFPE 396
+G F +Y + +FSK + L GN K++ + + +V DISQ +PE
Sbjct: 197 VGNLFQMYQTKKQ-WFSKTGSIIVVNLAASGNSDKLLIQKSIYVQDISQFVELYPE 251
>Z81513-1|CAB04174.1| 346|Caenorhabditis elegans Hypothetical
protein F26D2.1 protein.
Length = 346
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 365 SSTKWLILKTILPMLPSIGSGVMLLISCLLK*QYICFRYSKKAKP 231
S + W+ K +LP L +I SG+ L++ + Q+I +R+ P
Sbjct: 76 SLSTWISAKPLLPWLFAIWSGMYLVVIAFISIQFI-YRFMNFFNP 119
>Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical
protein C04B4.3 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 528 GFLIDDRAMIQEMFKVFNCDSL 463
G DR M Q +F+VFNC L
Sbjct: 111 GISYGDRNMTQSVFRVFNCQDL 132
>U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical
protein T20F7.6 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 441 VDHRIYKLISTNESFFWKFVVQLRNIINKMV 349
VDH +++L + NE + V+ L ++IN MV
Sbjct: 322 VDHNVHRLCAVNEHGGIEGVISLSDVINFMV 352
>U61952-2|AAB03160.1| 509|Caenorhabditis elegans Cytochrome p450
family protein 33E2 protein.
Length = 509
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +1
Query: 247 LYLKQIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQLYNKFP--EERFVGRYE 420
+YL ++ + ++ PLP++GN+ + DD+ Y+ F +E++ Y
Sbjct: 12 IYLFDLFYWKRRNLPPGPLPLPLVGNL-------HMMSDDVKPGYSLFSNLKEQYGHVYT 64
Query: 421 FVN---PVIYIRDIEIVKRITIKDFEHFL 498
F P++++ D ++K+ IKD +F+
Sbjct: 65 FWMASLPIVHVTDWNLIKQHFIKDGGNFV 93
>Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical
protein F55C5.7 protein.
Length = 848
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 174 YQTEQKKRYNDYHYMDISYRFGFLTVPEADILLL 275
Y+T ++KR D + S ++G+ PE+DI L
Sbjct: 684 YETNRRKRLTDGYSAPESSQYGWEPTPESDIWTL 717
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,925
Number of Sequences: 27780
Number of extensions: 242161
Number of successful extensions: 693
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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