Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e07r
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 272 2e-73
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 261 5e-70
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 256 1e-68
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 44 2e-04
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 1.1
01_06_0627 - 30705604-30706977 29 3.2
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 28 7.5
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 7.5
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 9.9
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 28 9.9
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 9.9
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 9.9
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 272 bits (667), Expect = 2e-73
Identities = 125/204 (61%), Positives = 158/204 (77%)
Frame = -1
Query: 757 PAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFG 578
P ++L VK+ + ++VAAQNCW GAFTGE+S M+ ++ + WVILGHSERR++ G
Sbjct: 37 PYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLG 96
Query: 577 EKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVL 398
E +E V +KVA+AL GLKVIAC+GETLE+RESG T +VV Q KA+ I D W N+V+
Sbjct: 97 ESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKD-WTNVVV 155
Query: 397 AYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELAS 218
AYEPVWAIGTGK ATP QAQ+VH LR WL+ANVS V+++ RI YGGSVT AN KELA+
Sbjct: 156 AYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAA 215
Query: 217 CKDIDGFLVGGASLKPEFVEIVNA 146
D+DGFLVGGASLKPEF++I+N+
Sbjct: 216 KPDVDGFLVGGASLKPEFIDIINS 239
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 261 bits (639), Expect = 5e-70
Identities = 124/204 (60%), Positives = 152/204 (74%)
Frame = -1
Query: 757 PAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFG 578
P ++L VK ++ + VAAQNCW GAFTGEIS M+ ++ V WVILGHSERR + G
Sbjct: 46 PFVFLPQVKGLLRPDFSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMG 105
Query: 577 EKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVL 398
E + VA+K+A+AL G+KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VL
Sbjct: 106 ESSDFVADKIAYALSQGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVL 164
Query: 397 AYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELAS 218
AYEPVWAIGTGK ATP QAQ+VH LR WL NVS +V+++ RI Y GSV AN KELA+
Sbjct: 165 AYEPVWAIGTGKVATPAQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAA 224
Query: 217 CKDIDGFLVGGASLKPEFVEIVNA 146
D+DGFLVGGASLKPEFV+I+ +
Sbjct: 225 KPDVDGFLVGGASLKPEFVDIIKS 248
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 256 bits (628), Expect = 1e-68
Identities = 120/205 (58%), Positives = 151/205 (73%), Gaps = 1/205 (0%)
Frame = -1
Query: 757 PAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFG 578
P IY+ VK + D +EV+AQN W GA+TGEIS + D+G WVILGHSERR + G
Sbjct: 93 PFIYIDQVKNSLTDRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIG 152
Query: 577 EKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVL 398
E D+ + +K A+AL +KVIACIGE LEERE+GKT +V F+Q+KA +I W ++V+
Sbjct: 153 EDDQFIGKKAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVI 211
Query: 397 AYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELAS 218
AYEPVWAIGTGK ATP+QAQ+VH A+R+WL NVS V+ +RI YGGSV AAN ELA
Sbjct: 212 AYEPVWAIGTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAK 271
Query: 217 CKDIDGFLVGGASLK-PEFVEIVNA 146
+DIDGFLVGGASLK P+F I+N+
Sbjct: 272 KEDIDGFLVGGASLKGPDFATIINS 296
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -1
Query: 340 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 173
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GASLK
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -1
Query: 583 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 404
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 403 VLAY 392
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 388 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 221
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -1
Query: 319 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 155
+NW + + SG + VR+ YGGSV +N+ + + GG KP F E+
Sbjct: 49 KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105
Query: 154 V 152
V
Sbjct: 106 V 106
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 203 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 352
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 610 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 431
+ H R E D +V K+ + S L+ + +EE +S ++ L L
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482
Query: 430 AIGDKWENIVLAYEPV 383
AIGD Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 695 LGCNFDIIRNDSLHIRQVNSRN 760
LG NF++ RND L I V +N
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKN 125
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 457 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 609
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 612 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 737
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,416,297
Number of Sequences: 37544
Number of extensions: 436571
Number of successful extensions: 1001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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