Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e07f
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12178| Best HMM Match : TIM (HMM E-Value=0)                         94   6e-20
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)               86   1e-17
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   8e-05
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   29   3.2  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               29   3.2  
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   28   4.2  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          28   5.6  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              27   7.3  

>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
          Length = 203

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 44/92 (47%), Positives = 63/92 (68%)
 Frame = +1

Query: 241 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 420
           D++   AQNC +   GA+TGE+S AM+  +GVN+VI+GHSERR  F E +E +A+KV  A
Sbjct: 7   DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66

Query: 421 LESGLKVIACIGETLEERESGKTEEVVFRQLK 516
           L + L+VI C GE+LE R++      V +Q+K
Sbjct: 67  LVNNLQVIFCCGESLEIRDADGQNNFVEQQIK 98


>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 52/116 (44%), Positives = 69/116 (59%)
 Frame = +1

Query: 187 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSER 366
           ++V  PA+YLSYV+     N+ VAAQNC+K   GA              ++W        
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA--------------LHW-------- 255

Query: 367 RTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAI 534
               G+  +L+ EKVAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+   I
Sbjct: 256 ----GD--QLIGEKVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKI 305


>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +1

Query: 76  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 183
           MGR+F VGGNWK+NG +  I E++    K  LD +V
Sbjct: 1   MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 178 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 303
           + EV++  PA+Y  +++  +P    +A QN +K   GAFTGE
Sbjct: 79  DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 344 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 174
           T  T   +II G +  +  PF      W  T+T+  + +F     + GTP  TS  G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/108 (25%), Positives = 48/108 (44%)
 Frame = -1

Query: 502  KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 323
            +QL Q  Q+   RE  Q +Q    Q    ++  QQQ HL  Q+    Q   +   + Q+ 
Sbjct: 1533 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 1591

Query: 322  *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 179
             + +   +Q +  +        QL+H Q+     +  + Q+ Q+LPQH
Sbjct: 1592 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 1637


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/108 (25%), Positives = 48/108 (44%)
 Frame = -1

Query: 502 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 323
           +QL Q  Q+   RE  Q +Q    Q    ++  QQQ HL  Q+    Q   +   + Q+ 
Sbjct: 187 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 245

Query: 322 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 179
            + +   +Q +  +        QL+H Q+     +  + Q+ Q+LPQH
Sbjct: 246 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 291


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 292 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 468
           +  E+S A+  D      IL   E++ I  + + E+  E++AH +E   +V+A     LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175

Query: 469 E 471
           E
Sbjct: 176 E 176


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -2

Query: 510 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 331
           LS+   +SL   + F + T  G    A +     LF   F F+  +C      KY  +  
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488

Query: 330 NVFDHS 313
             FDHS
Sbjct: 489 LTFDHS 494


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
 Frame = +1

Query: 133 INEIVNNLKKGPLDPNVEVIVG--VPAIYLSYVKTIIPDNVEVAAQNCWKS--PKGA--F 294
           ++ + N L  GPL PN  +I+   +  + L +V   + + V V     W    PKG   +
Sbjct: 367 MSAVKNYLIDGPLPPNTSLIMARVLAILILCFVPFAVSEYVRVCYYTNWSQYRPKGGTFW 426

Query: 295 TGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES---GLKV-IACIGET 462
             +I P +   V  ++  +  +       EK++    K  +AL+     LK  IA  G T
Sbjct: 427 PEDIDPHLCTHVIHSFSKVNLTTHVMEKYEKNDFDLYKRINALKKINPKLKTQIAVGGWT 486

Query: 463 LEERESGKTEEVVFRQLKAL 522
            EE+ S  ++ V  ++ +A+
Sbjct: 487 HEEKNSPFSKMVATKEKRAI 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,748
Number of Sequences: 59808
Number of extensions: 297960
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)