Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e07f
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate...   200   7e-52
AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical...   200   7e-52
U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related...    32   0.30 
U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related...    32   0.30 
AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-relat...    32   0.30 
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    29   2.1  
U97011-5|AAO12451.1|  168|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U97011-4|AAQ65202.1|  273|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U97011-3|AAQ65201.1|  316|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     25   9.5  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     25   9.5  

>U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate
           isomerase protein.
          Length = 247

 Score =  200 bits (487), Expect = 7e-52
 Identities = 94/150 (62%), Positives = 116/150 (77%)
 Frame = +1

Query: 76  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 255
           M RKF VGGNWKMNGD   ++ IV  L     + +V+V+V  PA YL+Y K+ +   V V
Sbjct: 1   MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60

Query: 256 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 435
           AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK  HALE+G+
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120

Query: 436 KVIACIGETLEERESGKTEEVVFRQLKALV 525
           KV+ CIGE LEERE+G T++V FRQL+A+V
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIV 150


>AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical
           protein Y17G7B.7 protein.
          Length = 247

 Score =  200 bits (487), Expect = 7e-52
 Identities = 94/150 (62%), Positives = 116/150 (77%)
 Frame = +1

Query: 76  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 255
           M RKF VGGNWKMNGD   ++ IV  L     + +V+V+V  PA YL+Y K+ +   V V
Sbjct: 1   MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60

Query: 256 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 435
           AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK  HALE+G+
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120

Query: 436 KVIACIGETLEERESGKTEEVVFRQLKALV 525
           KV+ CIGE LEERE+G T++V FRQL+A+V
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIV 150


>U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related
           protein protein1, isoform a protein.
          Length = 705

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 127 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 252
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related
           protein protein1, isoform b protein.
          Length = 712

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 127 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 252
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-related
           protein protein.
          Length = 705

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 127 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 252
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 351 KYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGC 256
           K N ++S + +H+G    +  +FWR+P  L C
Sbjct: 171 KVNSLFSKLSEHTG-EVINADNFWRIPDTLRC 201


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 118 GDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 240
           GD N    I+++++       +EV+ G PAI+ + V+ I+P
Sbjct: 47  GDSNYQEHIISDVEPQDFQKFLEVVHGEPAIFEATVQKILP 87


>U97011-5|AAO12451.1|  168|Caenorhabditis elegans Hypothetical
           protein F31F7.1b protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 492 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 328
           L+L R S  + L + GN +   + R +G+SN LF        K NC+ F   K +P+Y+ 
Sbjct: 73  LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132

Query: 327 VFDHSG*NFTSKSSFWRL 274
            F     NF   + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145


>U97011-4|AAQ65202.1|  273|Caenorhabditis elegans Hypothetical
           protein F31F7.1c protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 492 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 328
           L+L R S  + L + GN +   + R +G+SN LF        K NC+ F   K +P+Y+ 
Sbjct: 73  LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132

Query: 327 VFDHSG*NFTSKSSFWRL 274
            F     NF   + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145


>U97011-3|AAQ65201.1|  316|Caenorhabditis elegans Hypothetical
           protein F31F7.1a protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 492 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 328
           L+L R S  + L + GN +   + R +G+SN LF        K NC+ F   K +P+Y+ 
Sbjct: 73  LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132

Query: 327 VFDHSG*NFTSKSSFWRL 274
            F     NF   + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 106 WKMNGDKNQINEIVNNLKKGPLDPNVEVI 192
           W++NGD+  ++EI N+     LD +V VI
Sbjct: 83  WEINGDRETLSEIQNHNSYRDLDMDVLVI 111


>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +1

Query: 250 EVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES 429
           E+A Q   +S          PA+        ++  +S    +F   D ++A   +HAL+ 
Sbjct: 94  EIAVQAMHESVSSHMFDGYGPAVGALAAREAIVERYSSADNVFTADDVVLASGCSHALQM 153

Query: 430 GLKVIACIGETL 465
            ++ +A  GE +
Sbjct: 154 AIEAVANAGENI 165


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 256 QLRHYQE**SSHKTGK*QEHQQLPQH 179
           Q+RH Q+    H+  + Q+HQQ  QH
Sbjct: 429 QIRHQQQQAQQHQQAQ-QQHQQQAQH 453



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 481 QILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQ 377
           QI+  ++  Q ++    Q+   +Q  QQQ+   HQ
Sbjct: 369 QIMQQQQQQQQQEHQRQQMLLQQQQQQQQMQQHHQ 403


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 256 QLRHYQE**SSHKTGK*QEHQQLPQH 179
           Q+RH Q+    H+  + Q+HQQ  QH
Sbjct: 429 QIRHQQQQAQQHQQAQ-QQHQQQAQH 453



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 481 QILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQ 377
           QI+  ++  Q ++    Q+   +Q  QQQ+   HQ
Sbjct: 369 QIMQQQQQQQQQEHQRQQMLLQQQQQQQQMQQHHQ 403


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 256 QLRHYQE**SSHKTGK*QEHQQLPQH 179
           Q+RH Q+    H+  + Q+HQQ  QH
Sbjct: 407 QIRHQQQQAQQHQQAQ-QQHQQQAQH 431



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 481 QILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQ 377
           QI+  ++  Q ++    Q+   +Q  QQQ+   HQ
Sbjct: 347 QIMQQQQQQQQQEHQRQQMLLQQQQQQQQMQQHHQ 381


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 256 QLRHYQE**SSHKTGK*QEHQQLPQH 179
           Q+RH Q+    H+  + Q+HQQ  QH
Sbjct: 407 QIRHQQQQAQQHQQAQ-QQHQQQAQH 431



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 481 QILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQ 377
           QI+  ++  Q ++    Q+   +Q  QQQ+   HQ
Sbjct: 347 QIMQQQQQQQQQEHQRQQMLLQQQQQQQQMQQHHQ 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,655
Number of Sequences: 27780
Number of extensions: 243407
Number of successful extensions: 845
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)