Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e07f
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   248   4e-68
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   8.0  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   8.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  248 bits (606), Expect = 4e-68
 Identities = 114/153 (74%), Positives = 132/153 (86%)
 Frame = +1

Query: 76  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 255
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 256 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 435
           A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGL
Sbjct: 61  AGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGL 120

Query: 436 KVIACIGETLEERESGKTEEVVFRQLKALVSAI 534
           KVIACIGE LEERE+GKT+EVVFRQ KA+ + I
Sbjct: 121 KVIACIGEKLEEREAGKTDEVVFRQTKAIANKI 153


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 88  FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 240
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 469 LRESHQYRQ*LSSQIQGHEQPFQQQ 395
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 IVGVPAIYLSYVKTIIPDNVEVAAQN 267
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -1

Query: 499 QLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQ 395
           ++ +  Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 121 DKNQINEIVNNLK 159
           D  Q+N +VNN K
Sbjct: 92  DSEQVNRLVNNCK 104


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 512 NCLKTTSSVLPDSLSSRVSPIQA 444
           +C+KTT +V+       + P QA
Sbjct: 88  HCMKTTQAVVVSLYEDPIQPQQA 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,510
Number of Sequences: 438
Number of extensions: 3334
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)