Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e06r
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044)             66   3e-11
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                30   2.4  
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            28   7.2  
SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)         28   9.5  

>SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044)
          Length = 185

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
 Frame = -1

Query: 710 DGLYAISKNISIIQDYP--KAGAILTPNGRESKKLMESI-----NSNGSNW-----FNYW 567
           DG+  ++    II++Y   K+  ILTPN  E  +L  S+     + +G ++      +  
Sbjct: 9   DGIAVVTTYPEIIKNYDSKKSKVILTPNVVEFDRLYTSVMGKAADPHGDSYEQARSLSQE 68

Query: 566 GENVSVLEKGETDKFHSRVPSYNWAXXXXXXXXXXXXXGDFLSGSLATFYHWALTSDVCQ 387
             NV++  KG+ D           +              D LSGS+A F HWA  +  C+
Sbjct: 69  LGNVTICRKGQHDIITDGQTVVECSITGSNRRCGGQG--DLLSGSMAVFLHWA--NMWCE 124

Query: 386 GEQHGQISQS------LASYAAARLVRTCNSQAFEKYGRSMMASDMIKEIHSAYKKVF 231
                QIS+       +A+YAA+ L R CN  A+ +  RSM  SDMI++IH A++++F
Sbjct: 125 NNPDAQISEVTQNPTLVAAYAASGLTRWCNRLAYSRLKRSMTTSDMIQQIHQAFEELF 182


>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1411

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 714 RRWLIR----YFKKHIHYSGLSKGRRHFDTERTRIE 619
           RRWL      Y+ + ++++G+SK  RHF T R   E
Sbjct: 328 RRWLSEPSYGYWPQQLNFAGISKVSRHFTTRRVLYE 363


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 735 GEAHSHRRRWLIRYFKKHIHYSGLSKGRRHFDTERTRIEEV 613
           G  +  +R  LI Y K H +  G  K   HFD ERT+ +++
Sbjct: 272 GTVYILKRVELINYAKDHPN-EGYRKVAEHFDVERTQSQKI 311


>SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)
          Length = 337

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 110 NGHEKDVKQKKTLKGQI*DKYKLIPYSESKVAA 208
           + HE D++++   KG+I D+Y L+   ++ V A
Sbjct: 65  SSHELDLRRRALFKGEIKDEYNLLCSEQNPVEA 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,931,479
Number of Sequences: 59808
Number of extensions: 431046
Number of successful extensions: 1006
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)