Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e06r
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...    48   7e-06
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    30   1.6  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical p...    28   8.3  
Z81527-10|CAB04276.2|  218|Caenorhabditis elegans Hypothetical p...    28   8.3  

>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
 Frame = -1

Query: 761 DIIESCKVLEKPIVIDADGLYAISKNISIIQDYPK--AGAILTPNGRESKKLMES----- 603
           ++ E  +  + P VID DGL+ +S++I   + +P+  +  +LTPN  E  +L +S     
Sbjct: 109 ELFEFVRNRDVPFVIDGDGLWFVSEHI---EKFPRQMSATVLTPNIVEFSRLCKSALGEE 165

Query: 602 --INSNGSNWFNYWGE------NVSVLEKGETDKFHSRVPSYNWAXXXXXXXXXXXXXGD 447
             +N   ++   +         NV++  KGE D   +     +               GD
Sbjct: 166 DVLNVRNNSQLQHLAAELSRKMNVTIYLKGEVDLVVTPNGEVS-KCSTESSLRRCGGQGD 224

Query: 446 FLSGSLATFYHWALTSDVCQGEQHGQISQSLASYAAARLVRTCNSQAFEKYGRSMMASDM 267
             +GSL  F +WA  +    G+         A  A++ LVRT   +AFEK+GRSM    +
Sbjct: 225 VTAGSLGLFLYWAKKN---LGDDWTSAHHE-AGIASSWLVRTAGRRAFEKHGRSMNTPLL 280

Query: 266 IKEIHSAYKKV 234
           + EI    + V
Sbjct: 281 LDEIPKLVRDV 291


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 614 LMESINSNGSNWFNYWGENVSVLEKGETDKFHSRVPSYNW 495
           ++ S N N  ++ N   E+ S +EK E +  H  +P  NW
Sbjct: 4   VVASQNKNDRSFSNMESESSSNVEKSEKENHHQSLPDENW 43


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 675 YSGLSKGRRHFDTERTRIEEVDGIDKFEWI*LVQLL 568
           ++ L   R  +D  R  +E+ DG+D FEW  +V LL
Sbjct: 233 HTALRNYRLAYDQCRDTVEQWDGVDVFEWRSVVGLL 268


>Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical
           protein F35E12.9b protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 701 YAISKNISIIQDYPKAGAILTPNGRESKKLMESINSNG 588
           YA+  + S +Q Y K   ++T  G  +   M S+ +NG
Sbjct: 182 YALGNDASTVQGYDKYTVLMTSKGTTASGNMTSLATNG 219


>Z81527-10|CAB04276.2|  218|Caenorhabditis elegans Hypothetical
           protein F35E12.9a protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 701 YAISKNISIIQDYPKAGAILTPNGRESKKLMESINSNG 588
           YA+  + S +Q Y K   ++T  G  +   M S+ +NG
Sbjct: 122 YALGNDASTVQGYDKYTVLMTSKGTTASGNMTSLATNG 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,169
Number of Sequences: 27780
Number of extensions: 343442
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)