Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e06f
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 87 2e-18
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 29 0.38
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 27 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.2
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.2
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 8.2
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 8.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 8.2
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 86.6 bits (205), Expect = 2e-18
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Frame = +3
Query: 279 DILKKLTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYFSAIAAFKAGADIVYVITTED 458
++L ++ I P L+ KG GR+G+ GG YTGAPY+S++++ G+D ++ ++
Sbjct: 10 NLLTRVKRIIPPLLDTFHKGQAGRVGVFGGCQHYTGAPYYSSMSSMLFGSDQSHIFCEKE 69
Query: 459 AAPVIKIYSPDLIVYPFLNKKYAS-----------KISSLLPKMDAIVIGPGLG 587
AA VIK YSPDLIV+PFL +K + I ++ ++ AIVIGPGLG
Sbjct: 70 AANVIKSYSPDLIVHPFLREKDKAGPEDSVDKCFELIKPMMGRLHAIVIGPGLG 123
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 294 LTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYF----SAIAAF 416
+T ++P K+KGD+ +G I G Y G + SA+A F
Sbjct: 124 MTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCSTKSALAQF 168
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -2
Query: 328 FPLSVGTILLVNFFKISLEVRKFI-LHSLPLVIWKVNKITCKITRIILKLGVIINDMNYK 152
F LS +L +F K S+++ S + + + I +T + L +ND++Y+
Sbjct: 216 FRLSGPNEVLESFAKNSVDIEMLKPFVSQRIDAFSQDPILLAVTAKLSALQKKVNDVSYR 275
Query: 151 FRTLCVTIRGAK 116
F+T+ ++ GAK
Sbjct: 276 FKTISSSLYGAK 287
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 219 LFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLNG 326
+ F+I +G C+++ LTS + + +P LNG
Sbjct: 34 ILNFEIPSGVSCQLSSLTSSNFASGCKISAMPILNG 69
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 430 SAPALKAAMAEKYGAPVYSTDPPIIPILPRS 338
+A +KA + E G P ++ PPI P +P S
Sbjct: 209 NADFVKAYLNESAGTPTSTSAPPIPPSIPSS 239
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 352 ILPRSPFDFPLSVGTILLVNFFKISLEVRKFILHSLPLVIWKVNK 218
+ R F +++ L + F+++ + +LHSL L IWK K
Sbjct: 1480 LFERGHFLKRIAMNNYLCLYFWQVLDACPRNVLHSLSLEIWKCYK 1524
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 378 YTG-APYFSAIAAFKAGADIVYVITTEDAAPVIKIYSPDLIVYP 506
Y G +P S++ A+ +V VITT + SP VYP
Sbjct: 268 YVGPSPSASSVVAYTTKCIVVPVITTAASQSEAATPSPSAAVYP 311
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 497 SLSISKQKVCIENKFSIT*NGRDRYW 574
SLSI+KQ I+N +I+ R+ YW
Sbjct: 41 SLSIAKQFREIKNNINISHLSRENYW 66
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 459 AAPVIKIYSPDLIV 500
AAPVI +Y PD IV
Sbjct: 172 AAPVIHVYEPDAIV 185
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 438 YVITTEDAAPVIKIYSPDLIVYPFLNKKYASKISSLLPKM 557
Y++T E P S DL N Y+SK+S LL K+
Sbjct: 167 YLVTAEYTMPSTSEQSEDLF-----NNGYSSKVSELLRKL 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,239
Number of Sequences: 5004
Number of extensions: 39799
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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