Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e06f
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490...    28   4.8  
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363...    28   6.3  
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190           27   8.4  
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584     27   8.4  
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964     27   8.4  

>09_02_0535 -
           10346395-10346705,10347100-10347175,10348931-10349070,
           10349294-10349578,10349677-10349718,10350963-10351461,
           10351557-10351723,10352128-10352412,10352695-10352836
          Length = 648

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 318 LNGKSKGDLGRIGII---GGSVEYTGAPYFSAIAAFKAGADIV--YVITTEDAAPVIKIY 482
           LN   K D G   II   GGS +Y G    +   A + GAD++   +  T+D  P+  + 
Sbjct: 370 LNTSRKTDHGNPLIISHNGGSGDYPGCTDLAYENAVRDGADVIDCSIQMTKDGIPIC-MS 428

Query: 483 SPDLIVYPFLNKKYASKISSLLPKMDA 563
           S DL+    + +     + S++P++ +
Sbjct: 429 SIDLLATTDVQQSKFCSLLSVIPEIQS 455


>01_05_0754 +
           24933860-24934031,24936035-24936104,24936192-24936316,
           24936539-24936677,24936926-24937022,24937105-24937170,
           24937478-24937616,24938149-24938258,24938355-24938459,
           24938579-24938686
          Length = 376

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 430 SAPALKAAMAEKYGAPVYSTDPPIIPILPRSPFDFPLSVGTILLVNFFK 284
           +AP++ + + EK  A      PP++ + P+   DF  S   ++L  F K
Sbjct: 138 AAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHDFYNSATEVVLTIFAK 186


>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 521 LFV*KWIDYEIRTVNFNNWRCVFS-SNYVNYIRS 423
           LFV    DY+I+  N+   RC+F+   +++YIR+
Sbjct: 65  LFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRT 98


>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 521 LFV*KWIDYEIRTVNFNNWRCVFS-SNYVNYIRS 423
           LFV    DY+I+  N+   RC+F+   +++YIR+
Sbjct: 65  LFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRT 98


>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 521 LFV*KWIDYEIRTVNFNNWRCVFS-SNYVNYIRS 423
           LFV    DY+I+  N+   RC+F+   +++YIR+
Sbjct: 65  LFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRT 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,275
Number of Sequences: 37544
Number of extensions: 211326
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)