Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e06f
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23) 28 4.9
SB_34527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_27329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0) 28 6.5
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 27 8.6
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_34550| Best HMM Match : VWA (HMM E-Value=0) 27 8.6
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
Length = 951
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 442 T*TISAPALKAAMAEKYGAPVYSTDPPIIPILPRSPFDFP 323
T T++AP KA Y V+ TD P P+ +P D P
Sbjct: 435 TTTLTAPKEKAEALNGYVQSVFKTDAPNEPLPVLAPKDLP 474
>SB_34527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 283 ISLEVRKFILHSLPLVI--WKVNKITCKITRIILKLGVIINDMNYKFRTLCVTIRG 122
+S V +++L S PL++ WK K T + ++ V++ ++ R + +RG
Sbjct: 112 VSCPVLRYVLASTPLMLTLWKTKKFTRFVHDSLVGYKVMLRGRDFVLRNVLGNVRG 167
>SB_27329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 442 T*TISAPALKAAMAEKYGAPVYSTDPPIIPILPRSPFDFP 323
T T+ AP KA Y V+ TD P P+ +P D P
Sbjct: 33 TTTLKAPKEKAEALNGYFQSVFKTDAPNEPLPVLAPKDLP 72
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 150 NL*FISLIMTPSFNIILVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLNGK 329
N+ +++I+T + +I+ +I I + I N L+ +T I+P +G
Sbjct: 227 NISIVTIIITNNISIVTIITTTINISIIIINVMPPSPFRRWGSKALQNMT--IIPPGSGI 284
Query: 330 SKGDLGRIGIIGGSVEYTG 386
DL + G++G VE+ G
Sbjct: 285 VHQDLRQRGVVGKFVEFFG 303
>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 442 T*TISAPALKAAMAEKYGAPVYSTDPPIIPILPRSPFDFP 323
T T+ AP KA Y V+ TD P P+ +P D P
Sbjct: 447 TTTLKAPKEKAEALNGYFQSVFKTDAPNEPLPVLAPKDLP 486
>SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0)
Length = 613
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 205 ITRIILKLGVIINDMNYKFRTLCVTIRGAKRMKKNNQT 92
+T I +LGV++N+ + F T +R K+++KN Q+
Sbjct: 386 MTEEIGRLGVLVNEFEHPFHTHPGFLRTYKKVQKNVQS 423
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 116 KNEKKQPNKQWLKEIKTKH 60
KNE +Q K+WLK+ K H
Sbjct: 476 KNEMQQQGKEWLKQDKESH 494
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 369 SVEYTGAPYFSAIAAFKAGADIVYVITTEDAAPVIKIYSPDLIVYPFLNKKYASKISSLL 548
SVE GA F + F + I+T+DA + +YS LNK S +S +L
Sbjct: 4560 SVELQGAGNFGKLKEFVKRLVGSFKISTDDAHIALVMYSTTAKTEFTLNK--FSSVSDVL 4617
Query: 549 PKMDAIVIGPG 581
+DA+ G
Sbjct: 4618 AAIDALTYPSG 4628
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 369 SVEYTGAPYFSAIAAFKAGADIVYVITTEDAAPVIKIYSPDLIVYPFLNKKYASKISSLL 548
SVE GA F + F + I+T+DA + +YS LNK S +S +L
Sbjct: 5288 SVELQGAGNFGKLKEFVKRLVGSFKISTDDAHIALVMYSTTAKTEFTLNK--FSSVSDVL 5345
Query: 549 PKMDAIVIGPG 581
+DA+ G
Sbjct: 5346 AAIDALTYPSG 5356
>SB_34550| Best HMM Match : VWA (HMM E-Value=0)
Length = 519
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 369 SVEYTGAPYFSAIAAFKAGADIVYVITTEDAAPVIKIYSPDLIVYPFLNKKYASKISSLL 548
SVE GA F + F + I+T+DA + +YS LNK S +S +L
Sbjct: 393 SVELQGAGNFGKLKEFVKRLVGSFKISTDDAHIALVMYSTTAKTEFTLNK--FSSVSDVL 450
Query: 549 PKMDAIVIGPG 581
+DA+ G
Sbjct: 451 AAIDALTYPSG 461
>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 322 LSVGTILLVNFFKISLEVRKFILHSLPLVIWKV--NKITCKITRIILKLGVIINDMNYKF 149
LS+ I+ + + + E F+ SL + + +++ C+I IL +G+ + + +
Sbjct: 632 LSIFLIVAITYLLVVSEKFSFLPESLTNLSSTICQSRVICRIIASILIIGLYVAAVGNLY 691
Query: 148 RTLCVTI 128
T CVT+
Sbjct: 692 VTFCVTL 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,481,837
Number of Sequences: 59808
Number of extensions: 253206
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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