Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e05r
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   2.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   3.8  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   5.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   8.8  

>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 273 LSFLK*IV*YLIFVLFLTLWLYKISFFAFVI 181
           L+++  ++ Y IFV+F+ +W+Y   +  F I
Sbjct: 268 LNYVNTVIVYPIFVIFVFVWIYMRHYLNFKI 298


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 498 VDYDWLPKEIVNQLKKSPKTPKQSP 424
           VD  WLPK  ++ LKKS     ++P
Sbjct: 374 VDQLWLPKRSLSALKKSSSLTSENP 398


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 220 TLAV*N*FLCICYFFVTFVTFYSEKSILTVARLLICQ 110
           T ++ N FL ICY F+   T  S+ S+    R L  Q
Sbjct: 25  TFSLSNLFLAICYLFLNVRTVSSDSSVSLYDRQLFDQ 61


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 455 KNLPRRRSSRRAQGKQRDQQATTKKS 378
           KNLPR + S   Q KQ  Q  +++KS
Sbjct: 95  KNLPRNQKSNEIQEKQTFQTPSSEKS 120


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 613  WCWWSVGSRRRTASPRFIGQT*ITTFSVS 527
            W  WS   RR  A+P + G   IT  SVS
Sbjct: 1789 WLTWSYMYRRLVANPAYYGLQDITHESVS 1817


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 73  LTITQSVVKKSMADISIGVQLSKYFFRNKMSRM*QKNNKCKET 201
           LTI    V  +   +++G+ L K +F NK   M   NNK + T
Sbjct: 83  LTILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVITNNKLRMT 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,414
Number of Sequences: 5004
Number of extensions: 57519
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)