Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e05r
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889...    33   0.32 
05_07_0137 + 27955876-27956000,27957626-27957714,27957963-279580...    30   1.7  
05_03_0607 - 16149180-16149617,16149795-16150100                       29   5.2  
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    29   5.2  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   6.9  

>03_03_0214 +
           15487367-15487388,15488220-15488375,15488690-15488925,
           15489013-15489132,15490466-15490480
          Length = 182

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 533 CLSPLKLEQPVK*TMTGYLKKL*INSKNLPRRRSSRRAQGKQRDQQATTKKS 378
           C + + +++P        LKK    ++NL R RS     G +R +Q+TTKK+
Sbjct: 86  CAARVDVQEPNVSLTNASLKKKEFRTRNLKRNRSWTDKNGTRRKKQSTTKKT 137


>05_07_0137 +
           27955876-27956000,27957626-27957714,27957963-27958054,
           27959338-27959419,27960038-27960454,27960539-27960876,
           27961066-27961233
          Length = 436

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 167 RDILFRKKYF-DSCTPIDMSAMDFLTTDCVIVSGVVLCE 54
           ++I F K+YF DSC P+D S +  LT     ++ VV+ +
Sbjct: 339 KNIFFTKRYFRDSCLPVDGSYLKDLTVIVADLAKVVIID 377


>05_03_0607 - 16149180-16149617,16149795-16150100
          Length = 247

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 495 DYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 388
           D D+LP+E  N+   S K PK S +  K KR   DD
Sbjct: 138 DSDYLPEENNNRSSSSSKRPKGS-KIDKGKRVKADD 172


>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 590 SSQDSKPSLHWP-DVDHHVQCLSPLKLEQPVK*TMTGYLKKL*INSKNLPRRRSSRRAQG 414
           SS D KP    P + +   +  + +  E+P K   T  + K+   +K+  ++R  ++ QG
Sbjct: 340 SSSDQKPKPSKPTEEEREEKAAAAVAAEKPKKKKATNEIDKIFQATKSSGKKRKQQQQQG 399

Query: 413 KQRDQQATTKKSFEVMIKRDIKHK 342
           ++   +A   K      K+  K K
Sbjct: 400 EEESVRAKKPKERSEGAKKSNKAK 423


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 443 RRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHK 342
           RR +SR     QR    T  + +EV ++R+ KH+
Sbjct: 343 RRGASRYTDNNQRSDWRTEDRDYEVDVRREGKHR 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,575
Number of Sequences: 37544
Number of extensions: 340004
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)