Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e05r
(754 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 91 3e-18
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 91 3e-18
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 91 3e-18
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 91 3e-18
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 91 3e-18
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 91 3e-18
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 91 3e-18
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 91 3e-18
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 91 4e-18
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 141 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 200
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 201 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 256
Query: 393 DD 388
D
Sbjct: 257 SD 258
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 91.5 bits (217), Expect = 3e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 91.1 bits (216), Expect = 4e-18
Identities = 44/122 (36%), Positives = 67/122 (54%)
Frame = -2
Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
PFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y+F
Sbjct: 168 PFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLPVIVGLHQ 227
Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAG 394
T + ++VD W+P+E +NQ+ K+ +P++ PR R KRS G
Sbjct: 228 LLESRKRKRPIQKVEMG--TSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVG 283
Query: 393 DD 388
D
Sbjct: 284 SD 285
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,810,603
Number of Sequences: 237096
Number of extensions: 2051392
Number of successful extensions: 5650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5637
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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