Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e05r
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    80   1e-15
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
 Frame = -2

Query: 753 PFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXX 574
           P GL V ++Y+DA GN +   VYNQT+NI+E   G  GET FL++F              
Sbjct: 140 PVGLVVNVHYQDADGNVFVNNVYNQTINIMEDDSGFSGETGFLFIF-FVALSIGGLYLSN 198

Query: 573 XXXXXXXXXXXXXXXXXVETGTASEVDYDWLPKEIV-NQLKKSPKTPKQSPRARKAKRSA 397
                            VE GT+SEVD++W+P++ V N+ K+SP T   SP+ARK+ + A
Sbjct: 199 QFLSKLSRKSGLSKRRVVEQGTSSEVDFEWIPRDAVKNKEKRSPAT--VSPKARKSAKKA 256


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 196 LCICYFFVTFVTFYSEKSILTVARLLICQP 107
           L I YFF    T  SE   L + RLL+  P
Sbjct: 682 LLITYFFAIICTMVSELPALNIERLLLASP 711


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 674  STLWKYPKV*MERHSSYMSSLVLVECWLSSQDSKPSLHWPDVD 546
            S +W+ P++  + H++Y S L+     LSS D  P    P  D
Sbjct: 1482 SLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCD 1524


>AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical
           protein F52D2.1 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 236 LYYF*HFGCIKLVSLHLLFFCHIRDILFRKKYFDSCT 126
           L++F HF   K+          IRD L R+  F  CT
Sbjct: 240 LFHFPHFCVYKITDFPTQLAVKIRDNLMRRSTFQQCT 276


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 236 LYYF*HFGCIKLVSLHLLFFCHIRDILFRKKYFDSCT 126
           L++F HF   K+          IRD L R+  F  CT
Sbjct: 240 LFHFPHFCVYKITDFPTQLAVKIRDNLMRRSTFQQCT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,600
Number of Sequences: 27780
Number of extensions: 332331
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)