Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e05f
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565... 50 2e-06
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 30 1.8
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 4.1
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 28 5.4
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 5.4
01_06_1618 - 38681729-38683989,38685577-38685796 28 5.4
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 27 9.5
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 27 9.5
01_06_0467 - 29579159-29579662 27 9.5
>06_03_1396 +
29855256-29855328,29856019-29856180,29856466-29856516,
29857189-29857277,29857632-29857709,29857811-29858014,
29858101-29858172,29858262-29858306
Length = 257
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Frame = +3
Query: 201 VVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 380
+V DD V D + + ++T +F K + + AG E VG N+G
Sbjct: 47 IVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGLQNEGEST 99
Query: 381 YVVESMEASFRYLMDYTYYIQNFTALPY-NREVKPKQEATFAYSFIPNEAFAGRPFGLNV 557
V ++ ++ D+ Y QN T + N V +ATF Y+F ++ + L
Sbjct: 100 LNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTFAVSKFLQPGAYDLVG 159
Query: 558 QLNYRDASGNAYQEAVYNQTLNIVE 632
+ Y + N YQ YN T+ +VE
Sbjct: 160 YIVY-EIDQNPYQNVFYNGTVEVVE 183
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 198 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 329
Q+VGDD LV + V K+ Q+ L K V +G +T I+A
Sbjct: 326 QIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 391 NPWRHLSGI*WTTHTTFRTSPRCLITEKLSQNRKPPLPIPSSPMKLLL 534
N W+ S W++ + S C T+K S R P P PSS + LL
Sbjct: 66 NGWQGGSTDHWSSVSRSHCSNGCCTTQKPSSRRVLPPPNPSSSSQYLL 113
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 424 TTHTTFRTSPRCLITEKLSQNRKPPLPIPSSPMKLLL 534
T H R PR + S KP +P P+ P+ LL
Sbjct: 182 TVHKVVRDHPRSESRNQSSSTAKPSMPAPTKPVPPLL 218
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 198 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 368
+V+G + L+D + K +D+D TI + P D I++ Y EFF+GF+ +
Sbjct: 81 EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 318 DIQAGYPVEFFVGFINKGSVDYVVESMEASFRYLMDYTYYIQNFTALP 461
D +A P V + +G VD M SF+ L D + Y++ F+ALP
Sbjct: 776 DSEATRPSMGMVVQVLEGLVDVNAPPMPRSFKVLGDPSNYVKFFSALP 823
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 198 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 329
Q+VGDD LV + V K+ + L K V +G +T I+A
Sbjct: 354 QIVGDDLLVTNPTRVAKAISEKTCNALLLK-VNQIGSVTESIEA 396
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 439 FRTSPRCLITEKLSQNRKPPLPIPSSPMK 525
F T P T + + PPLP P+SP++
Sbjct: 763 FNTPPSASSTNAAAAAKLPPLPSPTSPLQ 791
>01_06_0467 - 29579159-29579662
Length = 167
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 246 KSSQDIDTTILFTKPVPSLGDL 311
K+SQ IDT ++F KP+ S +L
Sbjct: 25 KASQAIDTAVIFNKPISSSVEL 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,757
Number of Sequences: 37544
Number of extensions: 312573
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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