Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e05f
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                  134   8e-32
SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12)              28   7.4  
SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score =  134 bits (323), Expect = 8e-32
 Identities = 64/136 (47%), Positives = 86/136 (63%)
 Frame = +3

Query: 225 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 404
           ++ E  +K S D DT ILFTK             AG   +  V F N G  D++V+ MEA
Sbjct: 134 EEKEDALKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEA 187

Query: 405 SFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 584
           S RY  DY+YYIQNFTA  YN  VKP  +A+F Y+F P+E+F GRPFGL++ L Y+D  G
Sbjct: 188 SLRYPQDYSYYIQNFTAFQYNTVVKPGHQASFEYAFRPHESFGGRPFGLSINLLYKDTDG 247

Query: 585 NAYQEAVYNQTLNIVE 632
             Y++AV+N+T+ +VE
Sbjct: 248 KMYRDAVFNETVQLVE 263


>SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12)
          Length = 340

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 321 IQAGYPVEFFVGFINKGSV-DY-VVESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEA 494
           +Q  Y  ++F G  + G+  D+  V+++ A F +L     Y+      PY  E+ PK  A
Sbjct: 86  MQITYFDDYFSGLADFGNTADHGYVDNLGADFGFLT-VGRYVSCVVGCPYEGEINPKAVA 144

Query: 495 TFAY 506
             AY
Sbjct: 145 EVAY 148


>SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 195 NQVVGDDALVDDDESVVKSSQDID 266
           N  V DD + DDD+ VVK   D D
Sbjct: 219 NDAVDDDVVNDDDDDVVKDDGDDD 242


>SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 320 YSSWLPSGIFCGLHQQGFRRLCSRIHGGIFPVS-NG 424
           Y++W  +G+F   H    R++ S + G   PVS NG
Sbjct: 8   YAAWCEAGLFSQDHLMTLRKIDSELEGHPVPVSING 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,194
Number of Sequences: 59808
Number of extensions: 351833
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)