Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e05f
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 147 3e-35
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 147 3e-35
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 147 3e-35
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 147 3e-35
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 147 3e-35
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 147 3e-35
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 147 3e-35
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 146 4e-35
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 145 1e-34
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 147 bits (357), Expect = 3e-35
Identities = 72/141 (51%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 147 bits (356), Expect = 3e-35
Identities = 71/139 (51%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Frame = +3
Query: 219 LVDDDESVVKSS-QDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVES 395
L +D+E+V S +D D + P+ DL D A V+F VGF NKG+ D++VES
Sbjct: 35 LTEDEETVEDSIIEDEDDEAEVEEDEPT--DLVEDFPANNIVKFLVGFTNKGTEDFIVES 92
Query: 396 MEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRD 575
++ASFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY+D
Sbjct: 93 LDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKD 152
Query: 576 ASGNAYQEAVYNQTLNIVE 632
+GN +Q+AV+NQT+ ++E
Sbjct: 153 LNGNVFQDAVFNQTVTVIE 171
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 146 bits (355), Expect = 4e-35
Identities = 71/136 (52%), Positives = 94/136 (69%)
Frame = +3
Query: 225 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 404
+D ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++A
Sbjct: 71 EDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDA 122
Query: 405 SFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 584
SFRY DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY+D +G
Sbjct: 123 SFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNG 182
Query: 585 NAYQEAVYNQTLNIVE 632
N +Q+AV+NQT+ ++E
Sbjct: 183 NVFQDAVFNQTVTVIE 198
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 145 bits (352), Expect = 1e-34
Identities = 71/141 (50%), Positives = 96/141 (68%)
Frame = +3
Query: 210 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 389
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 390 ESMEASFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 569
ES++ASFRY D+ +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDHQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 570 RDASGNAYQEAVYNQTLNIVE 632
+D +GN +Q+AV+NQT+ ++E
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIE 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,193,959
Number of Sequences: 237096
Number of extensions: 1781872
Number of successful extensions: 3533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3526
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -