Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e05f
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   128   3e-30
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  128 bits (310), Expect = 3e-30
 Identities = 60/136 (44%), Positives = 86/136 (63%)
 Frame = +3

Query: 225 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 404
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 405 SFRYLMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 584
           SFR+  D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP GL V ++Y+DA G
Sbjct: 95  SFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADG 154

Query: 585 NAYQEAVYNQTLNIVE 632
           N +   VYNQT+NI+E
Sbjct: 155 NVFVNNVYNQTINIME 170


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 533 WKTFRIKCAA*LQRCQRKCLPGSS 604
           WK F+   AA LQRC+R C   +S
Sbjct: 14  WKVFKSVDAATLQRCRRVCTKWNS 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,259
Number of Sequences: 27780
Number of extensions: 270075
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)