Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e04r
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 120 6e-29
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 118 1e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 0.82
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 2.5
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 4.4
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 5.8
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 5.8
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 5.8
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 5.8
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 7.7
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 120 bits (288), Expect = 6e-29
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = -2
Query: 279 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 100
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 99 XXRMRHLKIVRRRFRNGFKEGKPT 28
RM +LK V R F+NGF+ GKPT
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 118 bits (285), Expect = 1e-28
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = -2
Query: 279 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 100
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 99 XXRMRHLKIVRRRFRNGFKEGKPTPPKKAVA 7
RM +LK V R F+NGF+ GKP A A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 0.82
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 71 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 184
T+F + +PV+ + FT+ W N A +P A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -2
Query: 243 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 160
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.2 bits (50), Expect = 4.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 180 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 281
+LI+ CD +++ CI + S + + S++ S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 173 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 280
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 5.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 175 PMWISCSKITILPLVSEG*AQEDYW 101
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 252 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 160
KR N L R +Q ++C CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 273 KGTSSFGKRRNKTHTLCRRCGRSS 202
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.4 bits (48), Expect = 7.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 269 VPQASVSAEIRPIRYAEDVVDRHITF 192
+PQ S+ + Y ED++D +++F
Sbjct: 704 IPQGSILSSFLCHFYMEDLIDEYLSF 729
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,595
Number of Sequences: 5004
Number of extensions: 22805
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -