Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e04r
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 122 6e-29
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 122 6e-29
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 120 2e-28
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 2.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 2.9
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 3.8
05_07_0219 - 28474661-28475146,28475979-28476644 26 6.7
03_02_0347 - 7676510-7677832 26 6.7
08_02_0700 + 20157793-20158461 25 8.9
04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371 25 8.9
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 122 bits (294), Expect = 6e-29
Identities = 53/97 (54%), Positives = 69/97 (71%)
Frame = -2
Query: 297 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 118
++ S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 117 XXXXXXXXRMRHLKIVRRRFRNGFKEGKPTPPKKAVA 7
RMR+++ V RRF++ F+EG P+K A
Sbjct: 76 RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 122 bits (294), Expect = 6e-29
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = -2
Query: 279 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 100
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 99 XXRMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 1
RMR+++ V RRF++ F+EG P+K A++
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 120 bits (290), Expect = 2e-28
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = -2
Query: 279 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 100
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 99 XXRMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 1
RMR+L+ V +RF++ F+EG P+K A++
Sbjct: 61 TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 166 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 71
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 255 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 151
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 267 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 184
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 291 KSDKMT-KGTSSFGKRRNKTHTLCRRCGR 208
KSD+ + G F + NK+ CRRCG+
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGK 350
>03_02_0347 - 7676510-7677832
Length = 440
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 144 IVILLQDIHIGRILIFECDMTIYHIFCIT 230
++ LL+ + IGR+ +++ D + H F T
Sbjct: 53 VLPLLEGLGIGRVRLYDADPAVLHAFAKT 81
>08_02_0700 + 20157793-20158461
Length = 222
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 234 HTLCRRCGRSSYH 196
H CR+CGRS +H
Sbjct: 204 HGKCRKCGRSRHH 216
>04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371
Length = 417
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 285 DKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 196
D+M S FG H L R+C S+ H
Sbjct: 66 DEMIFSVSLFGSSHQSIHKLYRKCWSSNSH 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,461
Number of Sequences: 37544
Number of extensions: 156985
Number of successful extensions: 364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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