Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e04f
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   122   9e-29
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   122   9e-29
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   120   3e-28
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   4.4  
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    27   4.4  
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292     27   5.9  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  122 bits (294), Expect = 9e-29
 Identities = 52/97 (53%), Positives = 68/97 (70%)
 Frame = +2

Query: 11  IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 190
           ++ S  + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA 
Sbjct: 16  LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75

Query: 191 XXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 301
                    MR+++ V RRF++ F+EG    P+K  A
Sbjct: 76  RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  122 bits (294), Expect = 9e-29
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 307
              MR+++ V RRF++ F+EG    P+K  A++
Sbjct: 61  TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  120 bits (290), Expect = 3e-28
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 307
              MR+L+ V +RF++ F+EG    P+K  A++
Sbjct: 61  TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 142 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 237
           I+   +T +  +S   + +D W W  PH  +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149


>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 53  GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 157
           G+ + K  T CR CG      +  K    CA+CG+P  K
Sbjct: 9   GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46


>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
          Length = 222

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 41  TSSFGKRRNKTHTLCRRCGRSSYHIQKS 124
           T +FG    K HT CR CG +S++  +S
Sbjct: 26  TYTFGTHTAK-HTFCRVCGITSFYTPRS 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,232,197
Number of Sequences: 37544
Number of extensions: 170051
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)